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| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == | + | == Gene SJ21060 == |
| − | * direction: | + | * transcription-direction: |
| − | ** left-to-right | + | ** negative |
| − | * common-name: | + | * right-end-position: |
| − | ** serine palmitoyltransferase | + | ** 124492 |
| − | * ec-number: | + | * left-end-position: |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50] | + | ** 109722 |
| − | == Reaction formula == | + | * centisome-position: |
| − | * 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] | + | ** 55.243282 |
| − | == Gene(s) associated with this reaction == | + | == Organism(s) associated with this gene == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [[S.japonica_carotenoid_curated]] |
| − | * Gene: [[SJ01689]] | + | == Reaction(s) associated == |
| | + | * [[1.14.11.2-RXN]] |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| | ** Category: [[orthology]] | | ** Category: [[orthology]] |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | * Gene: [[SJ05058]]
| + | == Pathway(s) associated == |
| − | ** Category: [[annotation]]
| + | * [[PWY-7894]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | ** '''1''' reactions found over '''6''' reactions in the full pathway |
| − | * Gene: [[SJ13300]]
| + | {{#set: transcription-direction=negative}} |
| − | ** Category: [[annotation]]
| + | {{#set: right-end-position=124492}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: left-end-position=109722}} |
| − | ** Category: [[orthology]]
| + | {{#set: centisome-position=55.243282 }} |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | {{#set: organism associated=S.japonica_carotenoid_curated}} |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | {{#set: nb reaction associated=1}} |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | {{#set: nb pathway associated=1}} |
| − | * Gene: [[SJ01690]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | </div>
| |
| − | == Pathway(s) == | |
| − | * [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12] | |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
| |
| − | ** '''4''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
| |
| − | ** '''4''' reactions found over '''13''' reactions in the full pathway | |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | == External links ==
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P25045 P25045]
| |
| − | ** [http://www.uniprot.org/uniprot/O15270 O15270]
| |
| − | ** [http://www.uniprot.org/uniprot/P48241 P48241]
| |
| − | ** [http://www.uniprot.org/uniprot/Q09925 Q09925]
| |
| − | ** [http://www.uniprot.org/uniprot/P40970 P40970]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
| |
| − | ** [http://www.uniprot.org/uniprot/Q20375 Q20375]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=serine palmitoyltransferase}} | |
| − | {{#set: ec-number=ec-2.3.1.50}} | |
| − | {{#set: nb gene associated=4}} | |
| − | {{#set: nb pathway associated=3}} | |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
| |
