Difference between revisions of "DTDP-DEOH-DEOXY-GLUCOSE"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7238 RXN0-7238] == * direction: ** left-to-right * common-name: ** long-chain fatty acid-coa l...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** left-to-right * common-name: ** phosphoribo...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** phosphoribosylamine-glycine ligase |
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* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/6. | + | ** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ06408]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
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== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277] | ||
+ | ** '''6''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P07244 P07244] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58347 Q58347] | ||
+ | ** [http://www.uniprot.org/uniprot/P12039 P12039] | ||
+ | ** [http://www.uniprot.org/uniprot/P21872 P21872] | ||
+ | ** [http://www.uniprot.org/uniprot/P15640 P15640] | ||
+ | ** [http://www.uniprot.org/uniprot/P00967 P00967] | ||
+ | ** [http://www.uniprot.org/uniprot/P16340 P16340] | ||
+ | ** [http://www.uniprot.org/uniprot/P22102 P22102] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6] | ||
+ | ** [http://www.uniprot.org/uniprot/P43845 P43845] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47] | ||
+ | ** [http://www.uniprot.org/uniprot/Q64737 Q64737] | ||
+ | ** [http://www.uniprot.org/uniprot/P20772 P20772] | ||
+ | ** [http://www.uniprot.org/uniprot/P26977 P26977] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59492 Q59492] | ||
+ | ** [http://www.uniprot.org/uniprot/P74232 P74232] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42804 Q42804] | ||
+ | ** [http://www.uniprot.org/uniprot/P52421 P52421] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=phosphoribosylamine-glycine ligase}} |
− | {{#set: ec-number=ec-6. | + | {{#set: ec-number=ec-6.3.4.13}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=annotation|orthology}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome| | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}} |
Revision as of 09:29, 27 August 2019
Contents
Reaction GLYRIBONUCSYN-RXN
- direction:
- left-to-right
- common-name:
- phosphoribosylamine-glycine ligase
- ec-number:
Reaction formula
- 1 5-P-BETA-D-RIBOSYL-AMINE[c] + 1 ATP[c] + 1 GLY[c] => 1 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE[c] + 1 ADP[c] + 1 PROTON[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ06408
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
- 6 reactions found over 5 reactions in the full pathway
- PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
- 5 reactions found over 5 reactions in the full pathway
- PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
- 4 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links