Difference between revisions of "2-DEOXYRIBOSE"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-O-ACETTRAN-RXN SERINE-O-ACETTRAN-RXN] == * direction: ** left-to-right * common-name: ** ser...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2901 RXN-2901] == * direction: ** reversible * common-name: ** 4-aminobutyrate aminotransferase...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-O-ACETTRAN-RXN SERINE-O-ACETTRAN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2901 RXN-2901] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** serine acetyltransferase
+
** 4-aminobutyrate aminotransferase, mitochondrial
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30]
+
** [http://enzyme.expasy.org/EC/2.6.1.19 ec-2.6.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[B-ALANINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[MALONATE-S-ALD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07892]]
−
* Gene: [[SJ14691]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15518]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00718]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14890]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7870]], L-cysteine biosynthesis VII (from S-sulfo-L-cysteine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7870 PWY-7870]
+
* [[BETA-ALA-DEGRADATION-I-PWY]], &beta;-alanine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=BETA-ALA-DEGRADATION-I-PWY BETA-ALA-DEGRADATION-I-PWY]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7274]], D-cycloserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7274 PWY-7274]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=CYSTSYN-PWY CYSTSYN-PWY]
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6936]], seleno-amino acid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30702 30702]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00908 R00908]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q39533 Q39533]
+
{{#set: common-name=4-aminobutyrate aminotransferase, mitochondrial}}
−
** [http://www.uniprot.org/uniprot/Q06750 Q06750]
+
{{#set: ec-number=ec-2.6.1.19}}
−
** [http://www.uniprot.org/uniprot/P71405 P71405]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P23145 P23145]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
 
−
** [http://www.uniprot.org/uniprot/P43886 P43886]
 
−
** [http://www.uniprot.org/uniprot/P32003 P32003]
 
−
** [http://www.uniprot.org/uniprot/P29847 P29847]
 
−
** [http://www.uniprot.org/uniprot/Q42588 Q42588]
 
−
** [http://www.uniprot.org/uniprot/Q39218 Q39218]
 
−
** [http://www.uniprot.org/uniprot/Q42538 Q42538]
 
−
** [http://www.uniprot.org/uniprot/P74089 P74089]
 
−
** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
 
−
** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
 
−
** [http://www.uniprot.org/uniprot/P93544 P93544]
 
−
** [http://www.uniprot.org/uniprot/O69218 O69218]
 
−
** [http://www.uniprot.org/uniprot/O32979 O32979]
 
−
** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=serine acetyltransferase}}
 
−
{{#set: ec-number=ec-2.3.1.30}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-2901

  • direction:
    • reversible
  • common-name:
    • 4-aminobutyrate aminotransferase, mitochondrial
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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