Difference between revisions of "RXN-14803"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9235 RXN-9235] == * direction: ** left-to-right * common-name: ** ubiquinone biosynthesis methy...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == * direction: ** left-to-right * common-name: ** 2-oxoglut...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** 2-oxoglutarate decarboxylase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/1.2.4.2 ec-1.2.4.2] |
+ | * synonymous: | ||
+ | ** 2-oxoglutarate decarboxylation | ||
+ | ** oxoglutarate decarboxylase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ21701]] | |
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | * Gene: [[SJ13629]] |
− | + | ** Category: [[orthology]] | |
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | + | * Gene: [[SJ06474]] | |
− | * Gene: [[ | + | ** Category: [[orthology]] |
− | ** Category: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
− | ** Category: [[ | ||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] |
− | ** ''' | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084] |
− | ** '''3''' reactions found over ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12189 12189] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P23129 P23129] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02218 Q02218] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60597 Q60597] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8] | ||
+ | ** [http://www.uniprot.org/uniprot/P20967 P20967] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3] | ||
+ | ** [http://www.uniprot.org/uniprot/P20707 P20707] | ||
+ | ** [http://www.uniprot.org/uniprot/P51056 P51056] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56600 Q56600] | ||
+ | ** [http://www.uniprot.org/uniprot/O49541 O49541] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59106 Q59106] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=2-oxoglutarate decarboxylase}} |
− | {{#set: ec-number=ec-2. | + | {{#set: ec-number=ec-1.2.4.2}} |
− | {{#set: nb gene associated= | + | {{#set: synonymous=oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}} |
+ | {{#set: nb gene associated=3}} | ||
{{#set: nb pathway associated=2}} | {{#set: nb pathway associated=2}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:30, 27 August 2019
Contents
Reaction 2OXOGLUTDECARB-RXN
- direction:
- left-to-right
- common-name:
- 2-oxoglutarate decarboxylase
- ec-number:
- synonymous:
- 2-oxoglutarate decarboxylation
- oxoglutarate decarboxylase
Reaction formula
- 1 2-KETOGLUTARATE[c] + 1 Oxo-glutarate-dehydrogenase-lipoyl[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 Oxo-glutarate-dehydro-suc-DH-lipoyl[c]
Gene(s) associated with this reaction
- Gene: SJ21701
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13629
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ06474
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-5084, 2-oxoglutarate decarboxylation to succinyl-CoA: PWY-5084
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- UNIPROT: