Difference between revisions of "RXN0-6977"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN] == * direction: ** reversible * ec-number: ** [http://enzyme...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** alanine-trna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7]
+
** [http://enzyme.expasy.org/EC/1.2.7.1 ec-1.2.7.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CO-A]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[PYRUVATE]][c] '''<=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05317]]
+
* Gene: [[SJ19470]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09204]]
+
* Gene: [[SJ09312]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02907]]
+
* Gene: [[SJ15200]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5493]], reductive monocarboxylic acid cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5493 PWY-5493]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5483]], pyruvate fermentation to acetate III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5483 PWY-5483]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[P142-PWY]], pyruvate fermentation to acetate I: [http://metacyc.org/META/NEW-IMAGE?object=P142-PWY P142-PWY]
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate): [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-II-PWY GLUDEG-II-PWY]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5600]], pyruvate fermentation to acetate VII: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5600 PWY-5600]
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12541 12541]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12768 12768]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01196 R01196]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P56452 P56452]
+
** [http://www.uniprot.org/uniprot/Q57957 Q57957]
−
** [http://www.uniprot.org/uniprot/O27718 O27718]
+
** [http://www.uniprot.org/uniprot/O28574 O28574]
−
** [http://www.uniprot.org/uniprot/O34526 O34526]
+
** [http://www.uniprot.org/uniprot/Q56316 Q56316]
−
** [http://www.uniprot.org/uniprot/P47534 P47534]
+
** [http://www.uniprot.org/uniprot/Q9R503 Q9R503]
−
** [http://www.uniprot.org/uniprot/O58035 O58035]
+
** [http://www.uniprot.org/uniprot/Q57714 Q57714]
−
** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
+
** [http://www.uniprot.org/uniprot/O05651 O05651]
−
** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
+
** [http://www.uniprot.org/uniprot/Q57715 Q57715]
−
** [http://www.uniprot.org/uniprot/Q57984 Q57984]
+
** [http://www.uniprot.org/uniprot/O27771 O27771]
−
** [http://www.uniprot.org/uniprot/O51238 O51238]
+
** [http://www.uniprot.org/uniprot/O28572 O28572]
−
** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
+
** [http://www.uniprot.org/uniprot/Q56317 Q56317]
−
** [http://www.uniprot.org/uniprot/O83980 O83980]
+
** [http://www.uniprot.org/uniprot/Q9UWL2 Q9UWL2]
−
** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
+
** [http://www.uniprot.org/uniprot/P56810 P56810]
−
** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
+
** [http://www.uniprot.org/uniprot/O28571 O28571]
−
** [http://www.uniprot.org/uniprot/O67323 O67323]
+
** [http://www.uniprot.org/uniprot/Q9UWL1 Q9UWL1]
−
** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
+
** [http://www.uniprot.org/uniprot/Q57717 Q57717]
−
** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
+
** [http://www.uniprot.org/uniprot/O25312 O25312]
−
** [http://www.uniprot.org/uniprot/P49588 P49588]
+
** [http://www.uniprot.org/uniprot/O25738 O25738]
−
** [http://www.uniprot.org/uniprot/P43815 P43815]
+
** [http://www.uniprot.org/uniprot/O25739 O25739]
−
** [http://www.uniprot.org/uniprot/P50475 P50475]
+
** [http://www.uniprot.org/uniprot/O58411 O58411]
−
** [http://www.uniprot.org/uniprot/P24075 P24075]
+
** [http://www.uniprot.org/uniprot/Q9UYZ4 Q9UYZ4]
−
** [http://www.uniprot.org/uniprot/P27866 P27866]
+
** [http://www.uniprot.org/uniprot/Q9UYZ3 Q9UYZ3]
−
** [http://www.uniprot.org/uniprot/P35029 P35029]
+
** [http://www.uniprot.org/uniprot/Q59455 Q59455]
−
** [http://www.uniprot.org/uniprot/P40825 P40825]
+
** [http://www.uniprot.org/uniprot/Q59456 Q59456]
−
** [http://www.uniprot.org/uniprot/P75368 P75368]
+
** [http://www.uniprot.org/uniprot/P80521 P80521]
−
** [http://www.uniprot.org/uniprot/Q48976 Q48976]
+
** [http://www.uniprot.org/uniprot/P80522 P80522]
−
** [http://www.uniprot.org/uniprot/P00957 P00957]
+
** [http://www.uniprot.org/uniprot/P80523 P80523]
−
** [http://www.uniprot.org/uniprot/P21894 P21894]
+
** [http://www.uniprot.org/uniprot/P80524 P80524]
−
** [http://www.uniprot.org/uniprot/O50189 O50189]
+
** [http://www.uniprot.org/uniprot/P95903 P95903]
 +
** [http://www.uniprot.org/uniprot/P95904 P95904]
 +
** [http://www.uniprot.org/uniprot/Q51799 Q51799]
 +
** [http://www.uniprot.org/uniprot/Q51800 Q51800]
 +
** [http://www.uniprot.org/uniprot/Q51802 Q51802]
 +
** [http://www.uniprot.org/uniprot/Q51803 Q51803]
 +
** [http://www.uniprot.org/uniprot/Q51804 Q51804]
 +
** [http://www.uniprot.org/uniprot/Q51805 Q51805]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=alanine-trna ligase}}
+
{{#set: ec-number=ec-1.2.7.1}}
−
{{#set: ec-number=ec-6.1.1.7}}
 
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=18}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 09:31, 27 August 2019

Reaction PYRUFLAVREDUCT-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-5493, reductive monocarboxylic acid cycle: PWY-5493
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6587, pyruvate fermentation to ethanol III: PWY-6587
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6588, pyruvate fermentation to acetone: PWY-6588
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I: PWY-6583
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5483, pyruvate fermentation to acetate III: PWY-5483
    • 1 reactions found over 2 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate: CENTFERM-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • P142-PWY, pyruvate fermentation to acetate I: P142-PWY
    • 2 reactions found over 1 reactions in the full pathway
  • GLUDEG-II-PWY, L-glutamate degradation VII (to butanoate): GLUDEG-II-PWY
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
    • 2 reactions found over 2 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6876, isopropanol biosynthesis (engineered): PWY-6876
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5600, pyruvate fermentation to acetate VII: PWY-5600
    • 2 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-6977&oldid=36505"