Difference between revisions of "PRICI"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-HYDROXYGLUTARATE-DEHYDROGENASE-RXN 2-HYDROXYGLUTARATE-DEHYDROGENASE-RXN] == * direction: ** rever...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN] == * direction: ** left-to...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN] == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** hydroxymethylglutaryl-coa lyase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.1.3.4 ec-4.1.3.4] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''=>''' 1 [[3-KETOBUTYRATE]][c] '''+''' 1 [[ACETYL-COA]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ21564]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY] | ||
| + | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367] | ||
| + | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-5074]], mevalonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5074 PWY-5074] | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24405 24405] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01360 R01360] |
| − | {{#set: direction= | + | * UNIPROT: |
| − | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P35914 P35914] |
| − | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/P35915 P35915] |
| + | ** [http://www.uniprot.org/uniprot/Q8L7K2 Q8L7K2] | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=hydroxymethylglutaryl-coa lyase}} | ||
| + | {{#set: ec-number=ec-4.1.3.4}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}} |
Revision as of 09:31, 27 August 2019
Contents
Reaction HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN
- direction:
- left-to-right
- common-name:
- hydroxymethylglutaryl-coa lyase
- ec-number:
Reaction formula
- 1 3-HYDROXY-3-METHYL-GLUTARYL-COA[c] => 1 3-KETOBUTYRATE[c] + 1 ACETYL-COA[c]
Gene(s) associated with this reaction
- Gene: SJ21564
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- LEU-DEG2-PWY, L-leucine degradation I: LEU-DEG2-PWY
- 4 reactions found over 6 reactions in the full pathway
- PWY66-367, ketogenesis: PWY66-367
- 4 reactions found over 5 reactions in the full pathway
- PWY-5074, mevalonate degradation: PWY-5074
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
