Difference between revisions of "RXN0-1061"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FACOAL18111Z FACOAL18111Z] == * direction: ** left-to-right * common-name: ** long-chain acyl-coa s...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12461 RXN-12461] == * direction: ** left-to-right * common-name: ** trna (carboxymethyluridine3...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12461 RXN-12461] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** trna (carboxymethyluridine34-5-o)-methyltransferase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.1.1.229 ec-2.1.1.229] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[carbo-me-ur-34-tRNA]][c] '''=>''' 1 [[5-2-me-oxy-2-oxo-et-ur-34-tRNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ02625]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
+ | * Gene: [[SJ16612]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7888]], tRNA-uridine 2-thiolation (cytoplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7888 PWY-7888] | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] | ||
+ | ** '''11''' reactions found over '''15''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43209 43209] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=trna (carboxymethyluridine34-5-o)-methyltransferase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-2.1.1.229}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: reconstruction category= | + | {{#set: nb pathway associated=2}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction category=annotation}} |
+ | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome}} |
Revision as of 09:31, 27 August 2019
Contents
Reaction RXN-12461
- direction:
- left-to-right
- common-name:
- trna (carboxymethyluridine34-5-o)-methyltransferase
- ec-number:
Reaction formula
- 1 S-ADENOSYLMETHIONINE[c] + 1 carbo-me-ur-34-tRNA[c] => 1 5-2-me-oxy-2-oxo-et-ur-34-tRNA[c] + 1 ADENOSYL-HOMO-CYS[c]
Gene(s) associated with this reaction
- Gene: SJ02625
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ16612
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7888, tRNA-uridine 2-thiolation (cytoplasmic): PWY-7888
- 2 reactions found over 7 reactions in the full pathway
- PWY-6829, tRNA methylation (yeast): PWY-6829
- 11 reactions found over 15 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA: