Difference between revisions of "SJ11801"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12932 CPD-12932] == * common-name: ** all-trans-3,4-didehydrolycopene * smiles: ** cc(c)=cc...")
(Created page with "Category:gene == Gene SJ17066 == * transcription-direction: ** positive * right-end-position: ** 172427 * left-end-position: ** 153491 * centisome-position: ** 56.59489...")
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12932 CPD-12932] ==
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== Gene SJ17066 ==
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* common-name:
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* transcription-direction:
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** all-trans-3,4-didehydrolycopene
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** positive
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* smiles:
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* right-end-position:
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** cc(c)=cc=cc(c)=cc=cc(c)=cc=cc(c)=cc=cc=c(c)c=cc=c(c)c=cc=c(c)ccc=c(c)c
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** 172427
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* inchi-key:
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* left-end-position:
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** ocmsupsdvxkdfy-fqmrbfjqsa-n
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** 153491
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* molecular-weight:
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* centisome-position:
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** 534.867
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** 56.59489   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-11976]]
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* [[S.japonica_sterols_curated]]
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* [[RXN-11999]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-12413]]
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* [[1.17.4.2-RXN]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=all-trans-3,4-didehydrolycopene}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=ocmsupsdvxkdfy-fqmrbfjqsa-n}}
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** Category: [[orthology]]
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{{#set: molecular-weight=534.867}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[ADPREDUCT-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[CDPREDUCT-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DAOTO]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[DGOTO]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[GDPREDUCT-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RIBONUCLEOSIDE-DIP-REDUCTI-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RIBONUCLEOSIDE-DIP-REDUCTII-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-722]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-723]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-724]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-745]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-746]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-747]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-748]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[UDPREDUCT-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7220]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7227]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-166]]
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** '''14''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7222]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7226]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7187]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=172427}}
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{{#set: left-end-position=153491}}
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{{#set: centisome-position=56.59489    }}
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{{#set: organism associated=S.japonica_sterols_curated}}
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{{#set: nb reaction associated=16}}
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{{#set: nb pathway associated=10}}

Revision as of 20:21, 18 December 2020

Gene SJ17066

  • transcription-direction:
    • positive
  • right-end-position:
    • 172427
  • left-end-position:
    • 153491
  • centisome-position:
    • 56.59489

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7220
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7227
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-166
    • 14 reactions found over 13 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7222
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7226
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7187
    • 6 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ11801&oldid=41480"