Difference between revisions of "SJ19894"
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(Created page with "Category:gene == Gene SJ12004 == * transcription-direction: ** positive * right-end-position: ** 307054 * left-end-position: ** 288572 * centisome-position: ** 79.65177...") |
(Created page with "Category:gene == Gene SJ18316 == * transcription-direction: ** negative * right-end-position: ** 81825 * left-end-position: ** 66220 * centisome-position: ** 10.214344...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ18316 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 81825 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 66220 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 10.214344 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_sterols_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[3.1.1.64-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[ACYL-COA-HYDROLASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[CARBOXYLESTERASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[FACOAE18111Z]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[FACOAE182]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PALMITOYL-COA-HYDROLASE-RXN]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[RETINYL-PALMITATE-ESTERASE-RXN]] |
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-10708]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-10711]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-10767]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12252]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12575]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-9624]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | * [[RXNQT-4366]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[ | + | * [[PWY-5994]] |
+ | ** '''31''' reactions found over '''31''' reactions in the full pathway | ||
+ | * [[PWY-1121]] | ||
+ | ** '''9''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-6733]] | ||
+ | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-321]] | ||
+ | ** '''3''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-735]] | ||
** '''16''' reactions found over '''19''' reactions in the full pathway | ** '''16''' reactions found over '''19''' reactions in the full pathway | ||
− | {{#set: transcription-direction= | + | * [[PWY-6303]] |
− | {{#set: right-end-position= | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | {{#set: left-end-position= | + | * [[PWY-6857]] |
− | {{#set: centisome-position= | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
− | {{#set: organism associated=S. | + | * [[PWY3O-355]] |
− | {{#set: nb reaction associated= | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
− | {{#set: nb pathway associated= | + | * [[PWY-5972]] |
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=81825}} | ||
+ | {{#set: left-end-position=66220}} | ||
+ | {{#set: centisome-position=10.214344 }} | ||
+ | {{#set: organism associated=S.japonica_sterols_curated}} | ||
+ | {{#set: nb reaction associated=14}} | ||
+ | {{#set: nb pathway associated=9}} |
Revision as of 20:24, 18 December 2020
Contents
Gene SJ18316
- transcription-direction:
- negative
- right-end-position:
- 81825
- left-end-position:
- 66220
- centisome-position:
- 10.214344
Organism(s) associated with this gene
Reaction(s) associated
- 3.1.1.64-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ACYL-COA-HYDROLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- CARBOXYLESTERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- FACOAE18111Z
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- FACOAE182
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PALMITOYL-COA-HYDROLASE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RETINYL-PALMITATE-ESTERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10708
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10711
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10767
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12252
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12575
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9624
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXNQT-4366
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5994
- 31 reactions found over 31 reactions in the full pathway
- PWY-1121
- 9 reactions found over 19 reactions in the full pathway
- PWY-6733
- 8 reactions found over 18 reactions in the full pathway
- PWY-321
- 3 reactions found over 16 reactions in the full pathway
- PWY-735
- 16 reactions found over 19 reactions in the full pathway
- PWY-6303
- 1 reactions found over 2 reactions in the full pathway
- PWY-6857
- 3 reactions found over 7 reactions in the full pathway
- PWY3O-355
- 6 reactions found over 6 reactions in the full pathway
- PWY-5972
- 4 reactions found over 6 reactions in the full pathway