Difference between revisions of "S-ADENMETSYN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-ACP-REDUCT-NADH-RXN ENOYL-ACP-REDUCT-NADH-RXN] == * direction: ** left-to-right * common-name...")
(Created page with "Category:reaction == Reaction AMP-DEPHOSPHORYLATION-RXN == * direction: ** left-to-right * common-name: ** amp phosphatase ** 5'-nucleotidase * ec-number: ** [http://enzym...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-ACP-REDUCT-NADH-RXN ENOYL-ACP-REDUCT-NADH-RXN] ==
+
== Reaction AMP-DEPHOSPHORYLATION-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2,3,4-saturated-fatty-acid-[acp] reductase
+
** amp phosphatase
−
** 2,3,4-saturated fatty acyl-[acp]:nad+ oxidoreductase
+
** 5'-nucleotidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.9 ec-1.3.1.9]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00320]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ18895]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03883]]
+
* Gene: [[SJ15366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09030]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18402]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
+
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
Line 26: Line 41:
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29376 29376]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01403 R01403]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16657 P16657]
+
** [http://www.uniprot.org/uniprot/P06196 P06196]
−
** [http://www.uniprot.org/uniprot/O24990 O24990]
+
** [http://www.uniprot.org/uniprot/P21588 P21588]
−
** [http://www.uniprot.org/uniprot/Q9JSS8 Q9JSS8]
+
** [http://www.uniprot.org/uniprot/O34313 O34313]
−
** [http://www.uniprot.org/uniprot/P0A5Y6 P0A5Y6]
+
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
−
** [http://www.uniprot.org/uniprot/O84106 O84106]
+
** [http://www.uniprot.org/uniprot/O29385 O29385]
−
** [http://www.uniprot.org/uniprot/Q9PMQ7 Q9PMQ7]
+
** [http://www.uniprot.org/uniprot/P44569 P44569]
−
** [http://www.uniprot.org/uniprot/P07149 P07149]
+
** [http://www.uniprot.org/uniprot/O83142 O83142]
−
** [http://www.uniprot.org/uniprot/P0AEK4 P0AEK4]
+
** [http://www.uniprot.org/uniprot/P49902 P49902]
−
** [http://www.uniprot.org/uniprot/Q51891 Q51891]
+
** [http://www.uniprot.org/uniprot/P22848 P22848]
−
** [http://www.uniprot.org/uniprot/O04945 O04945]
+
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
−
** [http://www.uniprot.org/uniprot/O04946 O04946]
+
** [http://www.uniprot.org/uniprot/P21589 P21589]
−
** [http://www.uniprot.org/uniprot/O24207 O24207]
+
** [http://www.uniprot.org/uniprot/P29240 P29240]
−
** [http://www.uniprot.org/uniprot/P93062 P93062]
+
** [http://www.uniprot.org/uniprot/P07024 P07024]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2,3,4-saturated-fatty-acid-[acp] reductase|2,3,4-saturated fatty acyl-[acp]:nad+ oxidoreductase}}
+
{{#set: common-name=amp phosphatase|5'-nucleotidase}}
−
{{#set: ec-number=ec-1.3.1.9}}
+
{{#set: ec-number=ec-3.1.3.5}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=5}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:39, 18 December 2020

Reaction AMP-DEPHOSPHORYLATION-RXN

  • direction:
    • left-to-right
  • common-name:
    • amp phosphatase
    • 5'-nucleotidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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