Difference between revisions of "RXN-14727"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-na...")
(Created page with "Category:reaction == Reaction PRIBFAICARPISOM-RXN == * direction: ** left-to-right * common-name: ** n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imi...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] ==
+
== Reaction PRIBFAICARPISOM-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** threonine-trna ligase
+
** n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.3 ec-6.1.1.3]
+
** [http://enzyme.expasy.org/EC/5.3.1.16 ec-5.3.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03199]]
+
* Gene: [[SJ12953]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20100]]
+
* Gene: [[SJ19186]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17482]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[HISTSYN-PWY]], L-histidine biosynthesis:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24625 24625]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15470 15470]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O83809 O83809]
+
** [http://www.uniprot.org/uniprot/Q02131 Q02131]
−
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
+
** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
−
** [http://www.uniprot.org/uniprot/P56071 P56071]
+
** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
−
** [http://www.uniprot.org/uniprot/O58430 O58430]
+
** [http://www.uniprot.org/uniprot/P44435 P44435]
−
** [http://www.uniprot.org/uniprot/P47615 P47615]
+
** [http://www.uniprot.org/uniprot/P10372 P10372]
−
** [http://www.uniprot.org/uniprot/O05947 O05947]
+
** [http://www.uniprot.org/uniprot/P10371 P10371]
−
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
+
** [http://www.uniprot.org/uniprot/P16250 P16250]
−
** [http://www.uniprot.org/uniprot/O67583 O67583]
+
** [http://www.uniprot.org/uniprot/P05324 P05324]
−
** [http://www.uniprot.org/uniprot/O27504 O27504]
+
** [http://www.uniprot.org/uniprot/P26720 P26720]
−
** [http://www.uniprot.org/uniprot/O51662 O51662]
+
** [http://www.uniprot.org/uniprot/P50936 P50936]
−
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
+
** [http://www.uniprot.org/uniprot/P74561 P74561]
−
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
+
** [http://www.uniprot.org/uniprot/O82782 O82782]
−
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
 
−
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
 
−
** [http://www.uniprot.org/uniprot/P43014 P43014]
 
−
** [http://www.uniprot.org/uniprot/P46244 P46244]
 
−
** [http://www.uniprot.org/uniprot/P75225 P75225]
 
−
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
 
−
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
 
−
** [http://www.uniprot.org/uniprot/O04630 O04630]
 
−
** [http://www.uniprot.org/uniprot/P18255 P18255]
 
−
** [http://www.uniprot.org/uniprot/P18256 P18256]
 
−
** [http://www.uniprot.org/uniprot/P04801 P04801]
 
−
** [http://www.uniprot.org/uniprot/P07236 P07236]
 
−
** [http://www.uniprot.org/uniprot/P26639 P26639]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=threonine-trna ligase}}
+
{{#set: common-name=n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase}}
−
{{#set: ec-number=ec-6.1.1.3}}
+
{{#set: ec-number=ec-5.3.1.16}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:41, 18 December 2020

Reaction PRIBFAICARPISOM-RXN

  • direction:
    • left-to-right
  • common-name:
    • n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HISTSYN-PWY, L-histidine biosynthesis:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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