Difference between revisions of "SJ06937"

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(Created page with "Category:gene == Gene SJ21325 == * transcription-direction: ** positive * right-end-position: ** 461644 * left-end-position: ** 453296 * centisome-position: ** 75.48982...")
(Created page with "Category:gene == Gene SJ06433 == * transcription-direction: ** negative * right-end-position: ** 35969 * left-end-position: ** 27709 * centisome-position: ** 34.82255...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ21325 ==
+
== Gene SJ06433 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 461644
+
** 35969
 
* left-end-position:
 
* left-end-position:
−
** 453296
+
** 27709
 
* centisome-position:
 
* centisome-position:
−
** 75.48982    
+
** 34.82255    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ASPARTATEKIN-RXN]]
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN1G-1435]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN1G-1436]]
+
* [[GLUTKIN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN1G-1437]]
+
* [[RXN-10068]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-1438]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-1439]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[TREHALOSEPHOSPHA-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12002]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-5097]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6559]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[P101-PWY]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2942]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6562]]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7153]]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[HOMOSERSYN-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6922]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[ARGININE-SYN4-PWY]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3341]]
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 +
* [[PROSYN-PWY]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7524]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6174]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7176]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s) associated ==
+
{{#set: transcription-direction=negative}}
−
* [[PWYG-321]]
+
{{#set: right-end-position=35969}}
−
** '''26''' reactions found over '''182''' reactions in the full pathway
+
{{#set: left-end-position=27709}}
−
* [[PWY-7900]]
+
{{#set: centisome-position=34.82255   }}
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
* [[PWY-881]]
+
{{#set: nb reaction associated=4}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
{{#set: nb pathway associated=17}}
−
* [[TREHALOSESYN-PWY]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TRESYN-PWY]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=461644}}
 
−
{{#set: left-end-position=453296}}
 
−
{{#set: centisome-position=75.48982   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=7}}
 
−
{{#set: nb pathway associated=5}}
 

Revision as of 14:46, 5 January 2021

Gene SJ06433

  • transcription-direction:
    • negative
  • right-end-position:
    • 35969
  • left-end-position:
    • 27709
  • centisome-position:
    • 34.82255

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5097
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6559
    • 2 reactions found over 4 reactions in the full pathway
  • P101-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • DAPLYSINESYN-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-2941
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2942
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6562
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7153
    • 4 reactions found over 8 reactions in the full pathway
  • HOMOSERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6922
    • 5 reactions found over 7 reactions in the full pathway
  • ARGININE-SYN4-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3341
    • 4 reactions found over 3 reactions in the full pathway
  • PROSYN-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-7524
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-6174
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7176
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06937&oldid=54698"