Difference between revisions of "SJ14157"
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(Created page with "Category:gene == Gene SJ17348 == * transcription-direction: ** positive * right-end-position: ** 41766 * left-end-position: ** 28599 * centisome-position: ** 10.866625...") |
(Created page with "Category:gene == Gene SJ16180 == * transcription-direction: ** positive * right-end-position: ** 201032 * left-end-position: ** 192550 * centisome-position: ** 67.21307...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ16180 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 201032 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 192550 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 67.21307 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[3- | + | * [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** source: [[ | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
− | * [[ | + | * [[6PGLUCONDEHYDROG-RXN]] |
− | + | ** Category: [[annotation]] | |
− | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | |
− | |||
− | ** Category: [[ | ||
− | *** source: [[ | ||
* [[OHACYL-COA-DEHYDROG-RXN]] | * [[OHACYL-COA-DEHYDROG-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
Line 80: | Line 77: | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* [[RXN-905]] | * [[RXN-905]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-9952]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* [[RXN0-2044]] | * [[RXN0-2044]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[TSA-REDUCT-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
Line 88: | Line 91: | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[VALDEG-PWY]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[P122-PWY]] | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
* [[PWY-5136]] | * [[PWY-5136]] | ||
** '''5''' reactions found over '''5''' reactions in the full pathway | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
Line 132: | Line 139: | ||
* [[PWY-81]] | * [[PWY-81]] | ||
** '''2''' reactions found over '''6''' reactions in the full pathway | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[OXIDATIVEPENT-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
* [[PWY0-321]] | * [[PWY0-321]] | ||
** '''2''' reactions found over '''9''' reactions in the full pathway | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
* [[PWY-1361]] | * [[PWY-1361]] | ||
** '''2''' reactions found over '''7''' reactions in the full pathway | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[GALACTARDEG-PWY]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[GLUCARDEG-PWY]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
</div> | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=201032}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=192550}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=67.21307 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=25}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=29}} |
Revision as of 14:21, 26 August 2019
Contents
Gene SJ16180
- transcription-direction:
- positive
- right-end-position:
- 201032
- left-end-position:
- 192550
- centisome-position:
- 67.21307
Organism(s) associated with this gene
Reaction(s) associated
- 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- 6PGLUCONDEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- OHACYL-COA-DEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10698
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10702
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10703
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-11245
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-11662
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12490
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12570
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12705
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12750
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16133
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17777
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17781
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17786
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17790
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17793
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17794
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17797
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-17798
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-905
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9952
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN0-2044
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- TSA-REDUCT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-5136
- 5 reactions found over 5 reactions in the full pathway
- FAO-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY66-391
- 6 reactions found over 7 reactions in the full pathway
- PWY-7007
- 4 reactions found over 6 reactions in the full pathway
- PWY-735
- 16 reactions found over 19 reactions in the full pathway
- PWY-6435
- 4 reactions found over 5 reactions in the full pathway
- PWY-5177
- 5 reactions found over 5 reactions in the full pathway
- PWY-7778
- 3 reactions found over 8 reactions in the full pathway
- PWY-6863
- 9 reactions found over 11 reactions in the full pathway
- CENTFERM-PWY
- 5 reactions found over 7 reactions in the full pathway
- PWY-6583
- 6 reactions found over 8 reactions in the full pathway
- PWY-6883
- 5 reactions found over 6 reactions in the full pathway
- PWY-5789
- 8 reactions found over 18 reactions in the full pathway
- P162-PWY
- 7 reactions found over 11 reactions in the full pathway
- PWY-7216
- 3 reactions found over 5 reactions in the full pathway
- PWY-7401
- 6 reactions found over 15 reactions in the full pathway
- PWY-7779
- 2 reactions found over 10 reactions in the full pathway
- PWY-7094
- 5 reactions found over 6 reactions in the full pathway
- PWY-6945
- 5 reactions found over 17 reactions in the full pathway
- PWY-6946
- 6 reactions found over 22 reactions in the full pathway
- PWY-6944
- 2 reactions found over 25 reactions in the full pathway
- PWY-81
- 2 reactions found over 6 reactions in the full pathway
- OXIDATIVEPENT-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY0-321
- 2 reactions found over 9 reactions in the full pathway
- PWY-1361
- 2 reactions found over 7 reactions in the full pathway
- GALACTARDEG-PWY
- 1 reactions found over 4 reactions in the full pathway
- GLUCARDEG-PWY
- 1 reactions found over 4 reactions in the full pathway