Difference between revisions of "HPPD"

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(Created page with "Category:reaction == Reaction ACETYLGLUTKIN-RXN == * direction: ** reversible * common-name: ** acetylglutamate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.8...")
(Created page with "Category:reaction == Reaction RXN-13603 == * direction: ** left-to-right * common-name: ** neolinustatin β-diglucosidase ** beta-glucosidase ** neolinustatinase (&bet...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETYLGLUTKIN-RXN ==
+
== Reaction RXN-13603 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** acetylglutamate kinase
+
** neolinustatin β-diglucosidase
 +
** beta-glucosidase
 +
** neolinustatinase (β-diglucosidase)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.8 ec-2.7.2.8]
+
** [http://enzyme.expasy.org/EC/3.2.1.21 ec-3.2.1.21]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-GLU]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[N-ACETYL-GLUTAMYL-P]][c]
+
* 1 [[CPD-14596]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-10277]][c] '''+''' 1 [[Glucopyranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09366]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ14193]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05533]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19930]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18897]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11958]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04559]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14973]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05740]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05257]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18318]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16402]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04558]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05782]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05741]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05532]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17199]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00855]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUTORN-PWY]], L-ornithine biosynthesis I:
+
* [[PWY-7092]], neolinustatin bioactivation:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14632 14632]
+
{{#set: common-name=beta-glucosidase|neolinustatinase (&beta;-diglucosidase)|neolinustatin &beta;-diglucosidase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-3.2.1.21}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02649 R02649]
+
{{#set: nb gene associated=17}}
−
* UNIPROT:
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P54898 P54898]
 
−
** [http://www.uniprot.org/uniprot/Q9PIR8 Q9PIR8]
 
−
** [http://www.uniprot.org/uniprot/Q60382 Q60382]
 
−
** [http://www.uniprot.org/uniprot/Q9JUK2 Q9JUK2]
 
−
** [http://www.uniprot.org/uniprot/Q9CHD2 Q9CHD2]
 
−
** [http://www.uniprot.org/uniprot/Q07905 Q07905]
 
−
** [http://www.uniprot.org/uniprot/P0A6C8 P0A6C8]
 
−
** [http://www.uniprot.org/uniprot/Q01217 Q01217]
 
−
** [http://www.uniprot.org/uniprot/P31318 P31318]
 
−
** [http://www.uniprot.org/uniprot/P69366 P69366]
 
−
** [http://www.uniprot.org/uniprot/P69365 P69365]
 
−
** [http://www.uniprot.org/uniprot/P73326 P73326]
 
−
** [http://www.uniprot.org/uniprot/O50147 O50147]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=acetylglutamate kinase}}
 
−
{{#set: ec-number=ec-2.7.2.8}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=3}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:01, 5 January 2021

Reaction RXN-13603

  • direction:
    • left-to-right
  • common-name:
    • neolinustatin β-diglucosidase
    • beta-glucosidase
    • neolinustatinase (β-diglucosidase)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7092, neolinustatin bioactivation:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=HPPD&oldid=62236"