Difference between revisions of "6.3.5.6-RXN"

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(Created page with "Category:reaction == Reaction PROTEIN-ARGININE-DEIMINASE-RXN == * direction: ** left-to-right * common-name: ** protein-arginine deiminase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction PYRNUTRANSHYDROGEN-RXN == * direction: ** left-to-right * common-name: ** nad(p)+ transhydrogenase (ab-specific) ** pyridine nucleotide trans...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROTEIN-ARGININE-DEIMINASE-RXN ==
+
== Reaction PYRNUTRANSHYDROGEN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** protein-arginine deiminase
+
** nad(p)+ transhydrogenase (ab-specific)
 +
** pyridine nucleotide transhydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.3.15 ec-3.5.3.15]
+
** [http://enzyme.expasy.org/EC/1.6.1.2 ec-1.6.1.2]
 +
** [http://enzyme.expasy.org/EC/1.6.1.3 ec-1.6.1.3]
 +
** [http://enzyme.expasy.org/EC/1.6.1.1 ec-1.6.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Protein-L-Arginines]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PROTEIN-L-CITRULLINE]][c]
+
* 1 [[NAD]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16434]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ03778]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13593]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10661]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08849]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20208]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03777]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03718]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20207]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20209]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-4921]], protein citrullination:
+
* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18090 18090]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11692 11692]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02621 R02621]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00112 R00112]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q08642 Q08642]
+
** [http://www.uniprot.org/uniprot/Q9JUR5 Q9JUR5]
−
** [http://www.uniprot.org/uniprot/P20717 P20717]
+
** [http://www.uniprot.org/uniprot/Q9JUR3 Q9JUR3]
−
** [http://www.uniprot.org/uniprot/P70708 P70708]
+
** [http://www.uniprot.org/uniprot/P11024 P11024]
 +
** [http://www.uniprot.org/uniprot/P07001 P07001]
 +
** [http://www.uniprot.org/uniprot/P0AB67 P0AB67]
 +
** [http://www.uniprot.org/uniprot/P43842 P43842]
 +
** [http://www.uniprot.org/uniprot/P43010 P43010]
 +
** [http://www.uniprot.org/uniprot/Q61941 Q61941]
 +
** [http://www.uniprot.org/uniprot/P73500 P73500]
 +
** [http://www.uniprot.org/uniprot/P73496 P73496]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protein-arginine deiminase}}
+
{{#set: common-name=pyridine nucleotide transhydrogenase|nad(p)+ transhydrogenase (ab-specific)}}
−
{{#set: ec-number=ec-3.5.3.15}}
+
{{#set: ec-number=ec-1.6.1.3|ec-1.6.1.2|ec-1.6.1.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=9}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:03, 5 January 2021

Reaction PYRNUTRANSHYDROGEN-RXN

  • direction:
    • left-to-right
  • common-name:
    • nad(p)+ transhydrogenase (ab-specific)
    • pyridine nucleotide transhydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5083, NAD/NADH phosphorylation and dephosphorylation:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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