Difference between revisions of "FPAIF"

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(Created page with "Category:reaction == Reaction 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate hydroxymethyltransferase * ec-nu...")
(Created page with "Category:reaction == Reaction RXN-9003 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.39 ec-2.5.1.39] == Reaction formula == * 1 4-h...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN ==
+
== Reaction RXN-9003 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** 3-methyl-2-oxobutanoate hydroxymethyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.11 ec-2.1.2.11]
+
** [http://enzyme.expasy.org/EC/2.5.1.39 ec-2.5.1.39]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-DEHYDROPANTOATE]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[4-hydroxybenzoate]][c] '''+''' 1 [[ALL-TRANS-HEXAPRENYL-DIPHOSPHATE]][c] '''=>''' 1 [[3-HEXAPRENYL-4-HYDROXYBENZOATE]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10361]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[annotation]]
+
* Gene: [[SJ10418]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04442]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03479]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19255]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10781]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PANTO-PWY]], phosphopantothenate biosynthesis I:
+
* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (eukaryotic):
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY3O-19]], ubiquinol-6 biosynthesis from 4-hydroxybenzoate (eukaryotic):
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11827 11827]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44557 44557]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01226 R01226]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05616 R05616]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q9V0E1 Q9V0E1]
+
{{#set: ec-number=ec-2.5.1.39}}
−
** [http://www.uniprot.org/uniprot/Q9JUY0 Q9JUY0]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/P31057 P31057]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/Q9PIK1 Q9PIK1]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P38122 P38122]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q09672 Q09672]
 
−
** [http://www.uniprot.org/uniprot/P52997 P52997]
 
−
** [http://www.uniprot.org/uniprot/Q9X712 Q9X712]
 
−
** [http://www.uniprot.org/uniprot/Q9Y7B6 Q9Y7B6]
 
−
** [http://www.uniprot.org/uniprot/Q9L7B2 Q9L7B2]
 
−
** [http://www.uniprot.org/uniprot/Q9RKS2 Q9RKS2]
 
−
** [http://www.uniprot.org/uniprot/Q9RLE2 Q9RLE2]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=3-methyl-2-oxobutanoate hydroxymethyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.11}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:04, 5 January 2021

Reaction RXN-9003

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7235, superpathway of ubiquinol-6 biosynthesis (eukaryotic):
    • 3 reactions found over n.a reactions in the full pathway
  • PWY3O-19, ubiquinol-6 biosynthesis from 4-hydroxybenzoate (eukaryotic):
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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