Difference between revisions of "SJ18897"

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(Created page with "Category:gene == Gene SJ05660 == * transcription-direction: ** positive * right-end-position: ** 25978 * left-end-position: ** 384 * centisome-position: ** 7.78922100e-2 =...")
 
(Created page with "Category:gene == Gene SJ09475 == * transcription-direction: ** positive * right-end-position: ** 34938 * left-end-position: ** 17492 * centisome-position: ** 43.00113...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05660 ==
+
== Gene SJ09475 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 25978
+
** 34938
 
* left-end-position:
 
* left-end-position:
−
** 384
+
** 17492
 
* centisome-position:
 
* centisome-position:
−
** 7.78922100e-2
+
** 43.00113   
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
−
* [[RXN-11519]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-11520]]
+
* [[ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11521]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12615]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7682]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN0-901]]
+
* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[XANTHINE-OXIDASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[GLYSYN-ALA-PWY]]
−
* [[PWY-6632]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6922]]
−
* [[PWY-6596]]
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
* [[ARGININE-SYN4-PWY]]
−
* [[P164-PWY]]
 
−
** '''6''' reactions found over '''17''' reactions in the full pathway
 
−
* [[SALVADEHYPOX-PWY]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5497]]
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[PWY-6606]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6607]]
 
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6999]]
+
* [[PWY-3341]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6344]]
 
** '''2''' reactions found over '''9''' reactions in the full pathway
 
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6608]]
+
* [[PWY-4981]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6538]]
+
* [[ARG-PRO-PWY]]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5695]]
+
* [[CITRULBIO-PWY]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
</div>
+
* [[ARGASEDEG-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=25978}}
+
{{#set: right-end-position=34938}}
−
{{#set: left-end-position=384}}
+
{{#set: left-end-position=17492}}
−
{{#set: centisome-position=7.78922100e-2}}
+
{{#set: centisome-position=43.00113    }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=9}}

Revision as of 14:22, 26 August 2019

Gene SJ09475

  • transcription-direction:
    • positive
  • right-end-position:
    • 34938
  • left-end-position:
    • 17492
  • centisome-position:
    • 43.00113

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLYSYN-ALA-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6922
    • 5 reactions found over 7 reactions in the full pathway
  • ARGININE-SYN4-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3341
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6344
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-4981
    • 3 reactions found over 6 reactions in the full pathway
  • ARG-PRO-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18897&oldid=18081"