Difference between revisions of "ALDHDEHYDROG-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-8025 == * direction: ** left-to-right * synonymous: ** β-carotene 3,3′-monooxygenase ** crtz == Reaction formula == * 1 CPD1...")
(Created page with "Category:reaction == Reaction ALDHDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** aldehyde dehydrogenase (nad) ** aldehyde dehydrogenase * ec-number: ** [h...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8025 ==
+
== Reaction ALDHDEHYDROG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
+
* common-name:
−
** β-carotene 3,3′-monooxygenase
+
** aldehyde dehydrogenase (nad)
−
** crtz
+
** aldehyde dehydrogenase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD1F-129]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-7409]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[Aldehydes]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Carboxylates]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07227]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[manual]]
+
* Gene: [[SJ17249]]
−
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
+
** Category: [[annotation]]
−
* Gene: [[SJ07228]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[manual]]
+
* Gene: [[SJ06470]]
−
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11330]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11331]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22552]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09287]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00435]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06359]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10107]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06047]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06456]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05897]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis):
+
* [[PWY-7269]], NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast):
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5944]], zeaxanthin biosynthesis:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae):
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16186 16186]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07558 R07558]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00538 R00538]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30326 30326]
+
** [http://www.uniprot.org/uniprot/P08157 P08157]
 +
** [http://www.uniprot.org/uniprot/P13601 P13601]
 +
** [http://www.uniprot.org/uniprot/P30839 P30839]
 +
** [http://www.uniprot.org/uniprot/P46368 P46368]
 +
** [http://www.uniprot.org/uniprot/P33744 P33744]
 +
** [http://www.uniprot.org/uniprot/P47895 P47895]
 +
** [http://www.uniprot.org/uniprot/P12693 P12693]
 +
** [http://www.uniprot.org/uniprot/P00352 P00352]
 +
** [http://www.uniprot.org/uniprot/P05091 P05091]
 +
** [http://www.uniprot.org/uniprot/P96824 P96824]
 +
** [http://www.uniprot.org/uniprot/P63937 P63937]
 +
** [http://www.uniprot.org/uniprot/P23883 P23883]
 +
** [http://www.uniprot.org/uniprot/P43353 P43353]
 +
** [http://www.uniprot.org/uniprot/P47738 P47738]
 +
** [http://www.uniprot.org/uniprot/Q27640 Q27640]
 +
** [http://www.uniprot.org/uniprot/P51647 P51647]
 +
** [http://www.uniprot.org/uniprot/P24549 P24549]
 +
** [http://www.uniprot.org/uniprot/P12762 P12762]
 +
** [http://www.uniprot.org/uniprot/P15437 P15437]
 +
** [http://www.uniprot.org/uniprot/P11884 P11884]
 +
** [http://www.uniprot.org/uniprot/P20000 P20000]
 +
** [http://www.uniprot.org/uniprot/P27463 P27463]
 +
** [http://www.uniprot.org/uniprot/P51977 P51977]
 +
** [http://www.uniprot.org/uniprot/P33008 P33008]
 +
** [http://www.uniprot.org/uniprot/P32872 P32872]
 +
** [http://www.uniprot.org/uniprot/P49189 P49189]
 +
** [http://www.uniprot.org/uniprot/P39616 P39616]
 +
** [http://www.uniprot.org/uniprot/P42041 P42041]
 +
** [http://www.uniprot.org/uniprot/P40108 P40108]
 +
** [http://www.uniprot.org/uniprot/Q25417 Q25417]
 +
** [http://www.uniprot.org/uniprot/P45959 P45959]
 +
** [http://www.uniprot.org/uniprot/P37685 P37685]
 +
** [http://www.uniprot.org/uniprot/P40047 P40047]
 +
** [http://www.uniprot.org/uniprot/Q7M0F9 Q7M0F9]
 +
** [http://www.uniprot.org/uniprot/P54114 P54114]
 +
** [http://www.uniprot.org/uniprot/P54115 P54115]
 +
** [http://www.uniprot.org/uniprot/P46367 P46367]
 +
** [http://www.uniprot.org/uniprot/Q62148 Q62148]
 +
** [http://www.uniprot.org/uniprot/Q55811 Q55811]
 +
** [http://www.uniprot.org/uniprot/P93344 P93344]
 +
** [http://www.uniprot.org/uniprot/O68123 O68123]
 +
** [http://www.uniprot.org/uniprot/Q9SU63 Q9SU63]
 +
** [http://www.uniprot.org/uniprot/P23240 P23240]
 +
** [http://www.uniprot.org/uniprot/O85973 O85973]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=&beta;-carotene 3,3&prime;-monooxygenase|crtz}}
+
{{#set: common-name=aldehyde dehydrogenase|aldehyde dehydrogenase (nad)}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-1.2.1.3}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=12}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction source=sjap}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:05, 5 January 2021

Reaction ALDHDEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • aldehyde dehydrogenase (nad)
    • aldehyde dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7269, NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ALDHDEHYDROG-RXN&oldid=63892"