Difference between revisions of "POLYNUCLEOTIDE-5-HYDROXYL-KINASE-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-14021 == * direction: ** left-to-right * common-name: ** β-d-4-deoxy-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-β-d-galactosami...") |
(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * direction: ** left-to-right * common-name: ** tryptophan synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction TRYPSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** tryptophan synthase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20] |
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ09991]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16706]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ20325]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ15468]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ10955]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P11081 P11081] | ||
+ | ** [http://www.uniprot.org/uniprot/P14671 P14671] | ||
+ | ** [http://www.uniprot.org/uniprot/P13228 P13228] | ||
+ | ** [http://www.uniprot.org/uniprot/P18284 P18284] | ||
+ | ** [http://www.uniprot.org/uniprot/P43759 P43759] | ||
+ | ** [http://www.uniprot.org/uniprot/O84172 O84172] | ||
+ | ** [http://www.uniprot.org/uniprot/P11080 P11080] | ||
+ | ** [http://www.uniprot.org/uniprot/P16608 P16608] | ||
+ | ** [http://www.uniprot.org/uniprot/P18285 P18285] | ||
+ | ** [http://www.uniprot.org/uniprot/P16706 P16706] | ||
+ | ** [http://www.uniprot.org/uniprot/P12290 P12290] | ||
+ | ** [http://www.uniprot.org/uniprot/P42391 P42391] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2] | ||
+ | ** [http://www.uniprot.org/uniprot/P12291 P12291] | ||
+ | ** [http://www.uniprot.org/uniprot/P42389 P42389] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60179 Q60179] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1] | ||
+ | ** [http://www.uniprot.org/uniprot/P07600 P07600] | ||
+ | ** [http://www.uniprot.org/uniprot/P07601 P07601] | ||
+ | ** [http://www.uniprot.org/uniprot/P06561 P06561] | ||
+ | ** [http://www.uniprot.org/uniprot/P56142 P56142] | ||
+ | ** [http://www.uniprot.org/uniprot/P06562 P06562] | ||
+ | ** [http://www.uniprot.org/uniprot/O27696 O27696] | ||
+ | ** [http://www.uniprot.org/uniprot/O28672 O28672] | ||
+ | ** [http://www.uniprot.org/uniprot/O66923 O66923] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0] | ||
+ | ** [http://www.uniprot.org/uniprot/P43760 P43760] | ||
+ | ** [http://www.uniprot.org/uniprot/P34817 P34817] | ||
+ | ** [http://www.uniprot.org/uniprot/P34816 P34816] | ||
+ | ** [http://www.uniprot.org/uniprot/P17167 P17167] | ||
+ | ** [http://www.uniprot.org/uniprot/P17166 P17166] | ||
+ | ** [http://www.uniprot.org/uniprot/P19868 P19868] | ||
+ | ** [http://www.uniprot.org/uniprot/P19867 P19867] | ||
+ | ** [http://www.uniprot.org/uniprot/P16578 P16578] | ||
+ | ** [http://www.uniprot.org/uniprot/P43283 P43283] | ||
+ | ** [http://www.uniprot.org/uniprot/P43284 P43284] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57011 Q57011] | ||
+ | ** [http://www.uniprot.org/uniprot/P31204 P31204] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01998 Q01998] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01997 Q01997] | ||
+ | ** [http://www.uniprot.org/uniprot/P34793 P34793] | ||
+ | ** [http://www.uniprot.org/uniprot/P42390 P42390] | ||
+ | ** [http://www.uniprot.org/uniprot/P50909 P50909] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42529 Q42529] | ||
+ | ** [http://www.uniprot.org/uniprot/P51382 P51382] | ||
+ | ** [http://www.uniprot.org/uniprot/P77960 P77960] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59992 Q59992] | ||
+ | ** [http://www.uniprot.org/uniprot/O22765 O22765] | ||
+ | ** [http://www.uniprot.org/uniprot/O04225 O04225] | ||
+ | ** [http://www.uniprot.org/uniprot/P25269 P25269] | ||
+ | ** [http://www.uniprot.org/uniprot/O64991 O64991] | ||
+ | ** [http://www.uniprot.org/uniprot/O05625 O05625] | ||
+ | ** [http://www.uniprot.org/uniprot/O13831 O13831] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8] | ||
+ | ** [http://www.uniprot.org/uniprot/P00931 P00931] | ||
+ | ** [http://www.uniprot.org/uniprot/P00929 P00929] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A877 P0A877] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A879 P0A879] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=tryptophan synthase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-4.2.1.20}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=5}} |
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:08, 5 January 2021
Contents
Reaction TRYPSYN-RXN
- direction:
- left-to-right
- common-name:
- tryptophan synthase
- ec-number:
Reaction formula
- 1 INDOLE-3-GLYCEROL-P[c] + 1 SER[c] => 1 GAP[c] + 1 TRP[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ09991
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16706
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ20325
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ15468
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ10955
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P11081
- P14671
- P13228
- P18284
- P43759
- O84172
- P11080
- P16608
- P18285
- P16706
- P12290
- P42391
- Q9PIF2
- P12291
- P42389
- Q60179
- Q9PIF1
- P07600
- P07601
- P06561
- P56142
- P06562
- O27696
- O28672
- O66923
- Q9JVC0
- P43760
- P34817
- P34816
- P17167
- P17166
- P19868
- P19867
- P16578
- P43283
- P43284
- Q57011
- P31204
- Q01998
- Q01997
- P34793
- P42390
- P50909
- Q42529
- P51382
- P77960
- Q59992
- O22765
- O04225
- P25269
- O64991
- O05625
- O13831
- Q9YGB0
- Q9YGA9
- Q9X7C8
- P00931
- P00929
- P0A2K1
- P0A877
- P0A879