Difference between revisions of "SJ20515"
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(Created page with "Category:gene == Gene SJ17838 == * transcription-direction: ** negative * right-end-position: ** 177565 * left-end-position: ** 164030 * centisome-position: ** 24.633863...") |
(Created page with "Category:gene == Gene SJ00085 == * transcription-direction: ** negative * right-end-position: ** 361531 * left-end-position: ** 316663 * centisome-position: ** 28.291162...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ00085 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 361531 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 316663 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 28.291162 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** Category: [[ | + | * [[G6PI]] |
− | *** source: [[ | + | ** Category: [[orthology]] |
− | * [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | ** Category: [[ | + | * [[GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN]] |
− | *** source: [[ | + | ** Category: [[orthology]] |
− | * [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | ** Category: [[ | + | * [[PGIA]] |
− | *** source: [[ | + | ** Category: [[orthology]] |
− | * [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | ** Category: [[ | + | * [[PGIAh]] |
− | *** source: [[ | + | ** Category: [[orthology]] |
− | * [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | * [[PGIB]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PGIBh]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PGLUCISOM-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** ''' | + | * [[PWY-6142]] |
− | * [[PWY | + | ** '''10''' reactions found over '''13''' reactions in the full pathway |
+ | * [[SUCSYN-PWY]] | ||
** '''6''' reactions found over '''7''' reactions in the full pathway | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5514]] |
− | ** '''9''' reactions found over ''' | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7385]] |
− | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-3801]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-621]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[P122-PWY]] | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-7347]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[P341-PWY]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY66-399]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5384]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5659]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[RUMP-PWY]] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6981]] | ||
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6992]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[UDPNAGSYN-PWY]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[P124-PWY]] | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-622]] | ||
+ | ** '''2''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-5054]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7238]] | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=361531}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=316663}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=28.291162 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=23}} |
Revision as of 15:16, 5 January 2021
Contents
Gene SJ00085
- transcription-direction:
- negative
- right-end-position:
- 361531
- left-end-position:
- 316663
- centisome-position:
- 28.291162
Organism(s) associated with this gene
Reaction(s) associated
- G6PI
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PGIA
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PGIAh
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PGIB
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PGIBh
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PGLUCISOM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- SUCSYN-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY-5514
- 5 reactions found over 7 reactions in the full pathway
- PWY-7385
- 7 reactions found over 9 reactions in the full pathway
- PWY-3801
- 4 reactions found over 5 reactions in the full pathway
- PWY-621
- 3 reactions found over 4 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-7347
- 1 reactions found over 3 reactions in the full pathway
- P341-PWY
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- PWY-5384
- 3 reactions found over 4 reactions in the full pathway
- PWY-5659
- 3 reactions found over 4 reactions in the full pathway
- RUMP-PWY
- 4 reactions found over 6 reactions in the full pathway
- PWY-6981
- 4 reactions found over 3 reactions in the full pathway
- PWY-6992
- 4 reactions found over 5 reactions in the full pathway
- UDPNAGSYN-PWY
- 4 reactions found over 5 reactions in the full pathway
- P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-622
- 2 reactions found over 10 reactions in the full pathway
- PWY-5054
- 1 reactions found over 3 reactions in the full pathway
- PWY-7238
- 5 reactions found over 8 reactions in the full pathway