Difference between revisions of "PREPHENATE-TRANSAMINE-RXN"

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(Created page with "Category:reaction == Reaction 3-DEHYDROSPHINGANINE-REDUCTASE-RXN == * direction: ** left-to-right * common-name: ** 3-ketodihydrosphingosine reductase * ec-number: ** [htt...")
(Created page with "Category:reaction == Reaction N-CARBAMOYLPUTRESCINE-AMIDASE-RXN == * direction: ** left-to-right * common-name: ** n-carbamoylputrescine amidohydrolase * ec-number: ** [ht...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-DEHYDROSPHINGANINE-REDUCTASE-RXN ==
+
== Reaction N-CARBAMOYLPUTRESCINE-AMIDASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-ketodihydrosphingosine reductase
+
** n-carbamoylputrescine amidohydrolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.102 ec-1.1.1.102]
+
** [http://enzyme.expasy.org/EC/3.5.1.53 ec-3.5.1.53]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-13612]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[CPD-597]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PUTRESCINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12778]]
+
* Gene: [[SJ06121]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
+
* [[PWY-43]], putrescine biosynthesis II:
−
** '''4''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5129]], sphingolipid biosynthesis (plants):
+
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
−
** '''4''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY3DJ-12]], ceramide de novo biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22642 22642]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22285 22285]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02978 R02978]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01152 R01152]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-ketodihydrosphingosine reductase}}
+
{{#set: common-name=n-carbamoylputrescine amidohydrolase}}
−
{{#set: ec-number=ec-1.1.1.102}}
+
{{#set: ec-number=ec-3.5.1.53}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:32, 5 January 2021

Reaction N-CARBAMOYLPUTRESCINE-AMIDASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • n-carbamoylputrescine amidohydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-43, putrescine biosynthesis II:
    • 3 reactions found over 3 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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