Difference between revisions of "RXN-12244"
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(Created page with "Category:reaction == Reaction TRANS-RXN-2 == * direction: ** left-to-right * common-name: ** potassium-transporting atpase * ec-number: ** [http://enzyme.expasy.org/EC/3.6...") |
(Created page with "Category:reaction == Reaction 1.1.1.39-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylase *...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction 1.1.1.39-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** malate dehydrogenase (decarboxylating) (nad+) |
+ | ** oxaloacetate decarboxylase | ||
+ | ** malate dehydrogenase, nad-requiring | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38] |
− | * | + | ** [http://enzyme.expasy.org/EC/1.1.1.39 ec-1.1.1.39] |
− | |||
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ14191]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13180]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ11643]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7118]], chitin degradation to ethanol: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]], gluconeogenesis I: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7686]], L-malate degradation II: | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-3641]], L-carnitine degradation III: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q48662 Q48662] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12] | ||
+ | ** [http://www.uniprot.org/uniprot/O59029 O59029] | ||
+ | ** [http://www.uniprot.org/uniprot/P16468 P16468] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2] | ||
+ | ** [http://www.uniprot.org/uniprot/P26616 P26616] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6] | ||
+ | ** [http://www.uniprot.org/uniprot/P37224 P37224] | ||
+ | ** [http://www.uniprot.org/uniprot/P37225 P37225] | ||
+ | ** [http://www.uniprot.org/uniprot/P37221 P37221] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9M162 Q9M162] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=malate dehydrogenase, nad-requiring|malate dehydrogenase (decarboxylating) (nad+)|oxaloacetate decarboxylase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-1.1.1.38|ec-1.1.1.39}} |
− | |||
{{#set: nb gene associated=3}} | {{#set: nb gene associated=3}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:35, 5 January 2021
Contents
Reaction 1.1.1.39-RXN
- direction:
- left-to-right
- common-name:
- malate dehydrogenase (decarboxylating) (nad+)
- oxaloacetate decarboxylase
- malate dehydrogenase, nad-requiring
- ec-number:
Reaction formula
- 1 MAL[c] + 1 NAD[c] => 1 CARBON-DIOXIDE[c] + 1 NADH[c] + 1 PYRUVATE[c]
Gene(s) associated with this reaction
- Gene: SJ14191
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13180
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ11643
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7118, chitin degradation to ethanol:
- 5 reactions found over 6 reactions in the full pathway
- GLUCONEO-PWY, gluconeogenesis I:
- 12 reactions found over 13 reactions in the full pathway
- PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
- 9 reactions found over 10 reactions in the full pathway
- PWY-7686, L-malate degradation II:
- 1 reactions found over 1 reactions in the full pathway
- PWY-3641, L-carnitine degradation III:
- 2 reactions found over 3 reactions in the full pathway
- PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
- 6 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- UNIPROT:
- LIGAND-RXN: