Difference between revisions of "RXN-16418"
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(Created page with "Category:reaction == Reaction RXN-9556 == * direction: ** left-to-right * common-name: ** 3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase ** 3-oxo-cis-vaccenoyl-[acp]...") |
(Created page with "Category:reaction == Reaction ISOCITDEH-RXN == * direction: ** reversible * common-name: ** isocitrate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.42...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ISOCITDEH-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** isocitrate dehydrogenase |
− | |||
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.1.1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.42 ec-1.1.1.42] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ08749]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
Line 24: | Line 16: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[PWY-6549]], L-glutamine biosynthesis III: | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): | ||
** '''4''' reactions found over '''5''' reactions in the full pathway | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VI (Helicobacter): | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | |
− | + | * RHEA: | |
− | {{#set: ec-number=ec-1.1.1. | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19632 19632] |
− | {{#set: nb gene associated= | + | * LIGAND-RXN: |
− | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267] |
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P16100 P16100] | ||
+ | ** [http://www.uniprot.org/uniprot/P33198 P33198] | ||
+ | ** [http://www.uniprot.org/uniprot/P41561 P41561] | ||
+ | ** [http://www.uniprot.org/uniprot/P41562 P41562] | ||
+ | ** [http://www.uniprot.org/uniprot/P50214 P50214] | ||
+ | ** [http://www.uniprot.org/uniprot/P41560 P41560] | ||
+ | ** [http://www.uniprot.org/uniprot/P56063 P56063] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3] | ||
+ | ** [http://www.uniprot.org/uniprot/P21954 P21954] | ||
+ | ** [http://www.uniprot.org/uniprot/P08200 P08200] | ||
+ | ** [http://www.uniprot.org/uniprot/O29610 O29610] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4] | ||
+ | ** [http://www.uniprot.org/uniprot/P39126 P39126] | ||
+ | ** [http://www.uniprot.org/uniprot/P50216 P50216] | ||
+ | ** [http://www.uniprot.org/uniprot/P50215 P50215] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04467 Q04467] | ||
+ | ** [http://www.uniprot.org/uniprot/P50217 P50217] | ||
+ | ** [http://www.uniprot.org/uniprot/P41939 P41939] | ||
+ | ** [http://www.uniprot.org/uniprot/P48735 P48735] | ||
+ | ** [http://www.uniprot.org/uniprot/P53982 P53982] | ||
+ | ** [http://www.uniprot.org/uniprot/P50218 P50218] | ||
+ | ** [http://www.uniprot.org/uniprot/O65853 O65853] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40345 Q40345] | ||
+ | ** [http://www.uniprot.org/uniprot/O14254 O14254] | ||
+ | ** [http://www.uniprot.org/uniprot/O75874 O75874] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=isocitrate dehydrogenase}} | ||
+ | {{#set: ec-number=ec-1.1.1.42}} | ||
+ | {{#set: nb gene associated=1}} | ||
+ | {{#set: nb pathway associated=12}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:36, 5 January 2021
Contents
Reaction ISOCITDEH-RXN
- direction:
- reversible
- common-name:
- isocitrate dehydrogenase
- ec-number:
Reaction formula
- 1 NADP[c] + 1 THREO-DS-ISO-CITRATE[c] <=> 1 2-KETOGLUTARATE[c] + 1 CARBON-DIOXIDE[c] + 1 NADPH[c]
Gene(s) associated with this reaction
- Gene: SJ08749
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6549, L-glutamine biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast):
- 4 reactions found over 5 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
- 10 reactions found over 11 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic):
- 9 reactions found over 10 reactions in the full pathway
- REDCITCYC, TCA cycle VI (Helicobacter):
- 5 reactions found over 9 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers):
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
- 10 reactions found over 12 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs):
- 10 reactions found over 11 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation:
- 11 reactions found over 16 reactions in the full pathway
- P23-PWY, reductive TCA cycle I:
- 9 reactions found over 12 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered):
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728, methylaspartate cycle:
- 11 reactions found over 19 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- PIR:
- UNIPROT: