Difference between revisions of "TRIOSEPISOMERIZATION-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN1G-368 == * direction: ** left-to-right * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy....") |
(Created page with "Category:reaction == Reaction SULFATE-ADENYLYLTRANS-RXN == * direction: ** reversible * common-name: ** sulfate adenylyltransferase * ec-number: ** [http://enzyme.expasy.o...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction SULFATE-ADENYLYLTRANS-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** sulfate adenylyltransferase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.7.7.4 ec-2.7.7.4] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SULFATE]][c] '''<=>''' 1 [[APS]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ09890]] | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ04851]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[DISSULFRED-PWY]], dissimilatory sulfate reduction I (to hydrogen sufide)): |
− | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
+ | * [[P224-PWY]], dissimilatory sulfate reduction II (to thiosulfate): | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6683]], assimilatory sulfate reduction III: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[SULFMETII-PWY]], assimilatory sulfate reduction II: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-5340]], sulfate activation for sulfonation: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5278]], sulfite oxidation III: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec-2. | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18136 18136] |
− | {{#set: nb gene associated= | + | * LIGAND-RXN: |
− | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00529 R00529] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q12650 Q12650] | ||
+ | ** [http://www.uniprot.org/uniprot/O33581 O33581] | ||
+ | ** [http://www.uniprot.org/uniprot/O34764 O34764] | ||
+ | ** [http://www.uniprot.org/uniprot/Q10600 Q10600] | ||
+ | ** [http://www.uniprot.org/uniprot/O67174 O67174] | ||
+ | ** [http://www.uniprot.org/uniprot/P21156 P21156] | ||
+ | ** [http://www.uniprot.org/uniprot/O23324 O23324] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUD7 Q9JUD7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM66 Q9PM66] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUD6 Q9JUD6] | ||
+ | ** [http://www.uniprot.org/uniprot/P28604 P28604] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27128 Q27128] | ||
+ | ** [http://www.uniprot.org/uniprot/P23845 P23845] | ||
+ | ** [http://www.uniprot.org/uniprot/O43252 O43252] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43170 Q43170] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43183 Q43183] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43870 Q43870] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12555 Q12555] | ||
+ | ** [http://www.uniprot.org/uniprot/P08536 P08536] | ||
+ | ** [http://www.uniprot.org/uniprot/P74241 P74241] | ||
+ | ** [http://www.uniprot.org/uniprot/O48888 O48888] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39595 Q39595] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96349 Q96349] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96541 Q96541] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S7D8 Q9S7D8] | ||
+ | ** [http://www.uniprot.org/uniprot/P13441 P13441] | ||
+ | ** [http://www.uniprot.org/uniprot/P13442 P13442] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=sulfate adenylyltransferase}} | ||
+ | {{#set: ec-number=ec-2.7.7.4}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=6}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:38, 5 January 2021
Contents
Reaction SULFATE-ADENYLYLTRANS-RXN
- direction:
- reversible
- common-name:
- sulfate adenylyltransferase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ09890
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04851
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- DISSULFRED-PWY, dissimilatory sulfate reduction I (to hydrogen sufide)):
- 2 reactions found over 4 reactions in the full pathway
- P224-PWY, dissimilatory sulfate reduction II (to thiosulfate):
- 2 reactions found over 5 reactions in the full pathway
- PWY-6683, assimilatory sulfate reduction III:
- 3 reactions found over 3 reactions in the full pathway
- SULFMETII-PWY, assimilatory sulfate reduction II:
- 3 reactions found over 3 reactions in the full pathway
- PWY-5340, sulfate activation for sulfonation:
- 2 reactions found over 2 reactions in the full pathway
- PWY-5278, sulfite oxidation III:
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links