Difference between revisions of "SJ19171"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ09853 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * BTS_LPAREN_nadph_RPAREN_...") |
(Created page with "Category:gene == Gene SJ09475 == * transcription-direction: ** positive * right-end-position: ** 34938 * left-end-position: ** 17492 * centisome-position: ** 43.00113...") |
||
| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ09475 == |
| + | * transcription-direction: | ||
| + | ** positive | ||
| + | * right-end-position: | ||
| + | ** 34938 | ||
| + | * left-end-position: | ||
| + | ** 17492 | ||
| + | * centisome-position: | ||
| + | ** 43.00113 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | * [[RXN- | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| + | * [[ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[GLYSYN-ALA-PWY]] |
| − | ** '''4''' reactions found over ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-6922]] |
| − | ** '''6''' reactions found over '''8''' reactions in the full pathway | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
| − | * [[PWY | + | * [[ARGININE-SYN4-PWY]] |
| − | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| + | * [[PWY-3341]] | ||
| + | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-6344]] | ||
| + | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-4981]] | ||
| + | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[ARG-PRO-PWY]] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[CITRULBIO-PWY]] | ||
| + | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[ARGASEDEG-PWY]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=34938}} | ||
| + | {{#set: left-end-position=17492}} | ||
| + | {{#set: centisome-position=43.00113 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=9}} |
Revision as of 13:03, 14 January 2021
Contents
Gene SJ09475
- transcription-direction:
- positive
- right-end-position:
- 34938
- left-end-position:
- 17492
- centisome-position:
- 43.00113
Organism(s) associated with this gene
Reaction(s) associated
- ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- ORNITHINE-GLU-AMINOTRANSFERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- GLYSYN-ALA-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-6922
- 5 reactions found over 7 reactions in the full pathway
- ARGININE-SYN4-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-3341
- 4 reactions found over 3 reactions in the full pathway
- PWY-6344
- 2 reactions found over 9 reactions in the full pathway
- PWY-4981
- 3 reactions found over 6 reactions in the full pathway
- ARG-PRO-PWY
- 3 reactions found over 4 reactions in the full pathway
- CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
- ARGASEDEG-PWY
- 3 reactions found over 3 reactions in the full pathway
