Difference between revisions of "RXN-7973-CPD-7424/OXYGEN-MOLECULE//CPD-7279/CPD-7280.44."

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction TYROSINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tyrosine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction RXN-8661 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TYROSINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-8661 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** tyrosine-trna ligase
+
** [histone-h3]-lysine-36 demethylase
 +
** histone demethylase activity (h3-k36 specific)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.1 ec-6.1.1.1]
+
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
 +
* synonymous:
 +
** h3-k36-specific demethylase
 +
** jhdm1a
 +
** histone-lysine (h3-k36) demethylase
 +
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 +
** histone demethylase
 +
** jmjc domain-containing histone demethylase 1a
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TYR]][c] '''+''' 1 [[TYR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TYR-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02072]]
+
* Gene: [[SJ18735]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ05371]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18555]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ19102]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02063]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00708]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13421]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19354]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10221 10221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02918 R02918]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28669 P28669]
 
−
** [http://www.uniprot.org/uniprot/P22326 P22326]
 
−
** [http://www.uniprot.org/uniprot/P36421 P36421]
 
−
** [http://www.uniprot.org/uniprot/P41256 P41256]
 
−
** [http://www.uniprot.org/uniprot/O51343 O51343]
 
−
** [http://www.uniprot.org/uniprot/Q9PN27 Q9PN27]
 
−
** [http://www.uniprot.org/uniprot/Q9CIH5 Q9CIH5]
 
−
** [http://www.uniprot.org/uniprot/Q9ZL69 Q9ZL69]
 
−
** [http://www.uniprot.org/uniprot/P47693 P47693]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCZ4 Q9ZCZ4]
 
−
** [http://www.uniprot.org/uniprot/P43836 P43836]
 
−
** [http://www.uniprot.org/uniprot/O83806 O83806]
 
−
** [http://www.uniprot.org/uniprot/Q57834 Q57834]
 
−
** [http://www.uniprot.org/uniprot/P56417 P56417]
 
−
** [http://www.uniprot.org/uniprot/O67632 O67632]
 
−
** [http://www.uniprot.org/uniprot/O58739 O58739]
 
−
** [http://www.uniprot.org/uniprot/Q9WYU8 Q9WYU8]
 
−
** [http://www.uniprot.org/uniprot/O27795 O27795]
 
−
** [http://www.uniprot.org/uniprot/O84065 O84065]
 
−
** [http://www.uniprot.org/uniprot/Q9JVY6 Q9JVY6]
 
−
** [http://www.uniprot.org/uniprot/P48527 P48527]
 
−
** [http://www.uniprot.org/uniprot/Q49900 Q49900]
 
−
** [http://www.uniprot.org/uniprot/P75122 P75122]
 
−
** [http://www.uniprot.org/uniprot/P73141 P73141]
 
−
** [http://www.uniprot.org/uniprot/P73144 P73144]
 
−
** [http://www.uniprot.org/uniprot/P95982 P95982]
 
−
** [http://www.uniprot.org/uniprot/P00952 P00952]
 
−
** [http://www.uniprot.org/uniprot/P04077 P04077]
 
−
** [http://www.uniprot.org/uniprot/P0AGJ9 P0AGJ9]
 
−
** [http://www.uniprot.org/uniprot/P12063 P12063]
 
−
** [http://www.uniprot.org/uniprot/P93363 P93363]
 
−
** [http://www.uniprot.org/uniprot/O14055 O14055]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tyrosine-trna ligase}}
+
{{#set: common-name=[histone-h3]-lysine-36 demethylase|histone demethylase activity (h3-k36 specific)}}
−
{{#set: ec-number=ec-6.1.1.1}}
+
{{#set: ec-number=ec-1.14.11}}
−
{{#set: nb gene associated=3}}
+
{{#set: synonymous=jmjc domain-containing histone demethylase 1a|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a|h3-k36-specific demethylase|histone-lysine (h3-k36) demethylase|histone demethylase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=6}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:15, 14 January 2021

Reaction RXN-8661

  • direction:
    • left-to-right
  • common-name:
    • [histone-h3]-lysine-36 demethylase
    • histone demethylase activity (h3-k36 specific)
  • ec-number:
  • synonymous:
    • h3-k36-specific demethylase
    • jhdm1a
    • histone-lysine (h3-k36) demethylase
    • protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
    • histone demethylase
    • jmjc domain-containing histone demethylase 1a

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Property "Common-name" (as page type) with input value "histone-h3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7973-CPD-7424/OXYGEN-MOLECULE//CPD-7279/CPD-7280.44.&oldid=88594"