Difference between revisions of "3.4.24.70-RXN"

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(Created page with "Category:reaction == Reaction RXNQT-4142 == * direction: ** left-to-right * common-name: ** l-galactose-1-phosphate phosphatase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction RXN-12244 == * direction: ** left-to-right * common-name: ** 15-cis-phytoene desaturase ** 15,9'-di-cis phytofluene desaturase * synonymous:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXNQT-4142 ==
+
== Reaction RXN-12244 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-galactose-1-phosphate phosphatase
+
** 15-cis-phytoene desaturase
−
* ec-number:
+
** 15,9'-di-cis phytofluene desaturase
−
** [http://enzyme.expasy.org/EC/3.1.3.93 ec-3.1.3.93]
+
* synonymous:
 +
** plant-type phytoene desaturase
 +
** pds
 +
** phytoene desaturase (ambiguous)
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPDQT-4]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[L-Galactopyranose]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[CPD-13171]][c] '''+''' 1 [[PLASTOQUINONE]][c] '''=>''' 1 [[CPD-7535]][c] '''+''' 1 [[Plastoquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20976]]
+
* Gene: [[SJ08891]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18979]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04955]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway):
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26350 26350]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30198 30198]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07674 R07674]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-galactose-1-phosphate phosphatase}}
+
{{#set: common-name=15-cis-phytoene desaturase|15,9'-di-cis phytofluene desaturase}}
−
{{#set: ec-number=ec-3.1.3.93}}
+
{{#set: synonymous=pds|plant-type phytoene desaturase|phytoene desaturase (ambiguous)}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:18, 14 January 2021

Reaction RXN-12244

  • direction:
    • left-to-right
  • common-name:
    • 15-cis-phytoene desaturase
    • 15,9'-di-cis phytofluene desaturase
  • synonymous:
    • plant-type phytoene desaturase
    • pds
    • phytoene desaturase (ambiguous)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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