Difference between revisions of "RXN-13202"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction FPGFTh == * direction: ** reversible * common-name: ** 10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase, chloroplast...") |
(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** dtdp-glucose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.or...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction DTDPGLUCDEHYDRAT-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** dtdp-glucose 4,6-dehydratase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ10476]] |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16241]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ00231]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-6808]], dTDP-D-forosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7657]], dTDP-β-L-digitoxose biosynthesis: | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7104]], dTDP-L-megosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6974]], dTDP-L-olivose biosynthesis: | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6976]], dTDP-L-mycarose biosynthesis: | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6953]], dTDP-3-acetamido-α-D-fucose biosynthesis: | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7414]], dTDP-α-D-mycaminose biosynthesis: | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6942]], dTDP-D-desosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7440]], dTDP-β-L-4-epi-vancosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7814]], dTDP-L-daunosamine biosynthesis: | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-3221]]: | ||
+ | ** '''1''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[PWY-7413]], dTDP-6-deoxy-α-D-allose biosynthesis: | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7312]], dTDP-D-β-fucofuranose biosynthesis: | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis: | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221] |
− | {{#set: nb pathway associated= | + | * LIGAND-RXN: |
− | {{#set: reconstruction category=orthology}} | + | ** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513] |
− | {{#set: reconstruction tool=pantograph}} | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1] | ||
+ | ** [http://www.uniprot.org/uniprot/P44914 P44914] | ||
+ | ** [http://www.uniprot.org/uniprot/P29782 P29782] | ||
+ | ** [http://www.uniprot.org/uniprot/P27830 P27830] | ||
+ | ** [http://www.uniprot.org/uniprot/P55294 P55294] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S642 Q9S642] | ||
+ | ** [http://www.uniprot.org/uniprot/P37759 P37759] | ||
+ | ** [http://www.uniprot.org/uniprot/P26391 P26391] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59626 Q59626] | ||
+ | ** [http://www.uniprot.org/uniprot/P39630 P39630] | ||
+ | ** [http://www.uniprot.org/uniprot/P37777 P37777] | ||
+ | ** [http://www.uniprot.org/uniprot/P37761 P37761] | ||
+ | ** [http://www.uniprot.org/uniprot/Q54144 Q54144] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56173 Q56173] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55420 Q55420] | ||
+ | ** [http://www.uniprot.org/uniprot/P55293 P55293] | ||
+ | ** [http://www.uniprot.org/uniprot/O66249 O66249] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4] | ||
+ | ** [http://www.uniprot.org/uniprot/O08246 O08246] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=dtdp-glucose 4,6-dehydratase}} | ||
+ | {{#set: ec-number=ec-4.2.1.46}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=20}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:20, 14 January 2021
Contents
Reaction DTDPGLUCDEHYDRAT-RXN
- direction:
- left-to-right
- common-name:
- dtdp-glucose 4,6-dehydratase
- ec-number:
Reaction formula
- 1 DTDP-D-GLUCOSE[c] => 1 DTDP-DEOH-DEOXY-GLUCOSE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ10476
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ16241
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00231
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6808, dTDP-D-forosamine biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-7657, dTDP-β-L-digitoxose biosynthesis:
- 1 reactions found over 7 reactions in the full pathway
- PWY-7104, dTDP-L-megosamine biosynthesis:
- 1 reactions found over 8 reactions in the full pathway
- PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-6974, dTDP-L-olivose biosynthesis:
- 1 reactions found over 7 reactions in the full pathway
- PWY-6976, dTDP-L-mycarose biosynthesis:
- 1 reactions found over 7 reactions in the full pathway
- PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis:
- 1 reactions found over 5 reactions in the full pathway
- PWY-7414, dTDP-α-D-mycaminose biosynthesis:
- 1 reactions found over 5 reactions in the full pathway
- PWY-7315, dTDP-N-acetylthomosamine biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis:
- 1 reactions found over 5 reactions in the full pathway
- PWY-6942, dTDP-D-desosamine biosynthesis:
- 1 reactions found over 6 reactions in the full pathway
- PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis:
- 1 reactions found over 8 reactions in the full pathway
- PWY-7814, dTDP-L-daunosamine biosynthesis:
- 2 reactions found over 6 reactions in the full pathway
- PWY-3221:
- 1 reactions found over n.a reactions in the full pathway
- PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- PWY-7312, dTDP-D-β-fucofuranose biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- PWY-7316, dTDP-N-acetylviosamine biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
- 3 reactions found over 4 reactions in the full pathway
- PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
- 1 reactions found over 6 reactions in the full pathway
- PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
- 2 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links