Difference between revisions of "SJ19192"
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(Created page with "Category:gene == Gene SJ14452 == * transcription-direction: ** negative * right-end-position: ** 270218 * left-end-position: ** 262705 * centisome-position: ** 83.446625...") |
(Created page with "Category:gene == Gene SJ08678 == * transcription-direction: ** positive * right-end-position: ** 24938 * left-end-position: ** 14666 * centisome-position: ** 28.898521...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ08678 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 24938 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 14666 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 28.898521 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[ASPAMINOTRANS-RXN]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[PHEAMINOTRANS-RXN]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | ** Category: [[ | + | * [[RXN-10814]] |
− | *** source: [[ | + | ** Category: [[orthology]] |
− | * [[RXN- | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | ** Category: [[ | + | * [[RXN-11737]] |
− | *** source: [[ | + | ** Category: [[orthology]] |
− | * [[RXN | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * [[RXN-13697]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[SUCCINYLDIAMINOPIMTRANS-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ASPARAGINE-DEG1-PWY-1]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[ASPARTATESYN-PWY]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[GLUTDEG-PWY]] | ||
** '''1''' reactions found over '''2''' reactions in the full pathway | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5913]] |
− | ** ''' | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7383]] |
− | ** ''' | + | ** '''4''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7117]] |
− | ** ''' | + | ** '''10''' reactions found over '''12''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7115]] |
− | ** ''' | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
− | * [[PWY | + | * [[ASPARTATE-DEG1-PWY]] |
** '''1''' reactions found over '''1''' reactions in the full pathway | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
− | {{#set: transcription-direction= | + | * [[MALATE-ASPARTATE-SHUTTLE-PWY]] |
− | {{#set: right-end-position= | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
− | {{#set: left-end-position= | + | * [[PWY-7432]] |
− | {{#set: centisome-position= | + | ** '''3''' reactions found over '''2''' reactions in the full pathway |
+ | * [[PWY-5079]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[ANAPHENOXI-PWY]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PHESYN]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6318]] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6638]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6642]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6643]] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[DAPLYSINESYN-PWY]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=24938}} | ||
+ | {{#set: left-end-position=14666}} | ||
+ | {{#set: centisome-position=28.898521 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=18}} |
Revision as of 18:46, 14 January 2021
Contents
Gene SJ08678
- transcription-direction:
- positive
- right-end-position:
- 24938
- left-end-position:
- 14666
- centisome-position:
- 28.898521
Organism(s) associated with this gene
Reaction(s) associated
- ASPAMINOTRANS-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- PHEAMINOTRANS-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-10814
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11737
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-13697
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- SUCCINYLDIAMINOPIMTRANS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- ASPARAGINE-DEG1-PWY-1
- 3 reactions found over 3 reactions in the full pathway
- ASPARTATESYN-PWY
- 1 reactions found over 1 reactions in the full pathway
- GLUTDEG-PWY
- 1 reactions found over 2 reactions in the full pathway
- PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- PWY-7383
- 4 reactions found over 7 reactions in the full pathway
- PWY-7117
- 10 reactions found over 12 reactions in the full pathway
- PWY-7115
- 9 reactions found over 10 reactions in the full pathway
- ASPARTATE-DEG1-PWY
- 1 reactions found over 1 reactions in the full pathway
- MALATE-ASPARTATE-SHUTTLE-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-7432
- 3 reactions found over 2 reactions in the full pathway
- PWY-5079
- 2 reactions found over 4 reactions in the full pathway
- ANAPHENOXI-PWY
- 1 reactions found over 3 reactions in the full pathway
- PHESYN
- 3 reactions found over 3 reactions in the full pathway
- PWY-6318
- 4 reactions found over 9 reactions in the full pathway
- PWY-6638
- 1 reactions found over 3 reactions in the full pathway
- PWY-6642
- 2 reactions found over 3 reactions in the full pathway
- PWY-6643
- 1 reactions found over 6 reactions in the full pathway
- DAPLYSINESYN-PWY
- 7 reactions found over 9 reactions in the full pathway