Difference between revisions of "4-ALPHA-METHYL-5-ALPHA-CHOLEST-7-EN-3-ON"

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(Created page with "Category:gene == Gene SJ04229 == * transcription-direction: ** positive * right-end-position: ** 194660 * left-end-position: ** 187785 * centisome-position: ** 36.380455...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11860 RXN-11860] == * direction: ** left-to-right * common-name: ** trna (cytidine-2'-o)-ribose...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ04229 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11860 RXN-11860] ==
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* transcription-direction:
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* direction:
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** positive
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** left-to-right
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* right-end-position:
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* common-name:
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** 194660
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** trna (cytidine-2'-o)-ribose methyltransferase
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* left-end-position:
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* ec-number:
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** 187785
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** [http://enzyme.expasy.org/EC/2.1.1.207 ec-2.1.1.207]
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* centisome-position:
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== Reaction formula ==
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** 36.380455   
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* 1 [[Cytidine-34-tRNAs]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[2-O-Methylcytidine-34-tRNAs]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ09745]]
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== Reaction(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[DHBDEHYD-RXN]]
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== Pathway(s)  ==
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** Category: [[orthology]]
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== Reconstruction information  ==
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[GLUCONATE-5-DEHYDROGENASE-RXN]]
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== External links  ==
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** Category: [[annotation]]
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* RHEA:
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43085 43085]
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* [[RIBITOL-2-DEHYDROGENASE-RXN]]
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{{#set: direction=left-to-right}}
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** Category: [[orthology]]
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{{#set: common-name=trna (cytidine-2'-o)-ribose methyltransferase}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: ec-number=ec-2.1.1.207}}
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* [[RXN-10060]]
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{{#set: nb gene associated=1}}
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** Category: [[annotation]]
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{{#set: nb pathway associated=0}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction category=annotation}}
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* [[RXN-10655]]
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{{#set: reconstruction tool=pathwaytools}}
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** Category: [[annotation]]
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{{#set: reconstruction comment=n.a}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction source=saccharina_japonica_genome}}
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* [[RXN-10659]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-11476]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-11480]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-13008]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16616]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16622]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16626]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16630]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9514]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9518]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9524]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-9528]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-9532]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9536]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-9540]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9552]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9556]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9633]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN0-2142]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN1G-157]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN1G-349]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN1G-469]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN1G-508]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[FASYN-ELONG-PWY]]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5901]]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[IDNCAT-PWY]]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[RIBITOLUTIL-PWY]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-6113]]
 
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** '''8''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWYG-321]]
 
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** '''26''' reactions found over '''182''' reactions in the full pathway
 
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* [[PWY-6282]]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6519]]
 
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** '''9''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-7664]]
 
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** '''13''' reactions found over '''14''' reactions in the full pathway
 
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* [[PWY-7663]]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-5971]]
 
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** '''31''' reactions found over '''31''' reactions in the full pathway
 
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* [[PWY-7388]]
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5994]]
 
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** '''31''' reactions found over '''31''' reactions in the full pathway
 
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* [[PWY-5367]]
 
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** '''2''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-5973]]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5989]]
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY3O-355]]
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY0-862]]
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7858]]
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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</div>
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=194660}}
 
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{{#set: left-end-position=187785}}
 
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{{#set: centisome-position=36.380455    }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=29}}
 
−
{{#set: nb pathway associated=19}}
 

Revision as of 14:24, 26 August 2019

Reaction RXN-11860

  • direction:
    • left-to-right
  • common-name:
    • trna (cytidine-2'-o)-ribose methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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