Difference between revisions of "CPD0-1422"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPSYN-RXN PRPPSYN-RXN] == * direction: ** reversible * common-name: ** ribose phosphate diphospho...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] == * direction: ** left-to-right * common-name: ** uroporphyrino...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPSYN-RXN PRPPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** ribose phosphate diphosphokinase
+
** uroporphyrinogen iii synthase
−
** ribose-phosphate diphosphokinase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.6.1 ec-2.7.6.1]
+
** [http://enzyme.expasy.org/EC/4.2.1.75 ec-4.2.1.75]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PRPP]][c]
+
* 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19532]]
−
* Gene: [[SJ07300]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08336]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17219]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11019]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-662]], PRPP biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-662 PWY0-662]
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15612 15612]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01049 R01049]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q63468 Q63468]
+
** [http://www.uniprot.org/uniprot/P10746 P10746]
−
** [http://www.uniprot.org/uniprot/Q9CEI4 Q9CEI4]
+
** [http://www.uniprot.org/uniprot/P51163 P51163]
−
** [http://www.uniprot.org/uniprot/O67556 O67556]
+
** [http://www.uniprot.org/uniprot/P21248 P21248]
−
** [http://www.uniprot.org/uniprot/P44328 P44328]
+
** [http://www.uniprot.org/uniprot/Q58401 Q58401]
−
** [http://www.uniprot.org/uniprot/Q9PP15 Q9PP15]
+
** [http://www.uniprot.org/uniprot/P09126 P09126]
−
** [http://www.uniprot.org/uniprot/P56184 P56184]
+
** [http://www.uniprot.org/uniprot/Q59294 Q59294]
−
** [http://www.uniprot.org/uniprot/P65235 P65235]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q9CHB8 Q9CHB8]
+
{{#set: common-name=uroporphyrinogen iii synthase}}
−
** [http://www.uniprot.org/uniprot/P42816 P42816]
+
{{#set: ec-number=ec-4.2.1.75}}
−
** [http://www.uniprot.org/uniprot/Q59988 Q59988]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P14193 P14193]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P0A1V6 P0A1V6]
 
−
** [http://www.uniprot.org/uniprot/P0A717 P0A717]
 
−
** [http://www.uniprot.org/uniprot/P60891 P60891]
 
−
** [http://www.uniprot.org/uniprot/P11908 P11908]
 
−
** [http://www.uniprot.org/uniprot/P21108 P21108]
 
−
** [http://www.uniprot.org/uniprot/P60892 P60892]
 
−
** [http://www.uniprot.org/uniprot/P09330 P09330]
 
−
** [http://www.uniprot.org/uniprot/P32895 P32895]
 
−
** [http://www.uniprot.org/uniprot/Q59489 Q59489]
 
−
** [http://www.uniprot.org/uniprot/P38620 P38620]
 
−
** [http://www.uniprot.org/uniprot/P38063 P38063]
 
−
** [http://www.uniprot.org/uniprot/P38689 P38689]
 
−
** [http://www.uniprot.org/uniprot/Q42581 Q42581]
 
−
** [http://www.uniprot.org/uniprot/P41831 P41831]
 
−
** [http://www.uniprot.org/uniprot/P46585 P46585]
 
−
** [http://www.uniprot.org/uniprot/Q42583 Q42583]
 
−
** [http://www.uniprot.org/uniprot/Q14558 Q14558]
 
−
** [http://www.uniprot.org/uniprot/Q55848 Q55848]
 
−
** [http://www.uniprot.org/uniprot/Q49042 Q49042]
 
−
** [http://www.uniprot.org/uniprot/O64888 O64888]
 
−
** [http://www.uniprot.org/uniprot/Q680A5 Q680A5]
 
−
** [http://www.uniprot.org/uniprot/Q93Z66 Q93Z66]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=ribose-phosphate diphosphokinase|ribose phosphate diphosphokinase}}
 
−
{{#set: ec-number=ec-2.7.6.1}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction UROGENIIISYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • uroporphyrinogen iii synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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