Difference between revisions of "56-Dihydrouracil47-in-tRNAs"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] == * direction: ** left-to-right * common-name: ** phosphoribosylformylgly...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] == * direction: ** left-to-right * common-name: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoribosylformylglycinamide synthetase
+
** acetate-coa ligase
 +
** acetyl-coa synthetase (amp-forming)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.5.3 ec-6.3.5.3]
+
** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09235]]
+
* Gene: [[SJ08601]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09236]]
+
* Gene: [[SJ16901]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
+
* [[PWY0-1313]], acetate conversion to acetyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1313 PWY0-1313]
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
+
* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
+
* [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-161]], ethanol degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-161 PWY66-161]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY66-162]], ethanol degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-162 PWY66-162]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17129 17129]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04463 R04463]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O67691 O67691]
+
** [http://www.uniprot.org/uniprot/P27095 P27095]
−
** [http://www.uniprot.org/uniprot/Q9UXW5 Q9UXW5]
+
** [http://www.uniprot.org/uniprot/P31638 P31638]
−
** [http://www.uniprot.org/uniprot/Q9PNY0 Q9PNY0]
+
** [http://www.uniprot.org/uniprot/Q12662 Q12662]
−
** [http://www.uniprot.org/uniprot/O28339 O28339]
+
** [http://www.uniprot.org/uniprot/P28812 P28812]
−
** [http://www.uniprot.org/uniprot/Q9PHZ7 Q9PHZ7]
+
** [http://www.uniprot.org/uniprot/P27550 P27550]
−
** [http://www.uniprot.org/uniprot/O26270 O26270]
+
** [http://www.uniprot.org/uniprot/O34613 O34613]
−
** [http://www.uniprot.org/uniprot/Q59042 Q59042]
+
** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
−
** [http://www.uniprot.org/uniprot/Q58660 Q58660]
+
** [http://www.uniprot.org/uniprot/P36333 P36333]
−
** [http://www.uniprot.org/uniprot/O27427 O27427]
+
** [http://www.uniprot.org/uniprot/Q01574 Q01574]
−
** [http://www.uniprot.org/uniprot/Q9JWC5 Q9JWC5]
+
** [http://www.uniprot.org/uniprot/P39062 P39062]
−
** [http://www.uniprot.org/uniprot/P35852 P35852]
+
** [http://www.uniprot.org/uniprot/Q01576 Q01576]
−
** [http://www.uniprot.org/uniprot/P38972 P38972]
+
** [http://www.uniprot.org/uniprot/P52910 P52910]
−
** [http://www.uniprot.org/uniprot/Q55843 Q55843]
+
** [http://www.uniprot.org/uniprot/Q55404 Q55404]
−
** [http://www.uniprot.org/uniprot/Q55037 Q55037]
+
** [http://www.uniprot.org/uniprot/P16928 P16928]
−
** [http://www.uniprot.org/uniprot/P12041 P12041]
+
** [http://www.uniprot.org/uniprot/P16929 P16929]
−
** [http://www.uniprot.org/uniprot/P12042 P12042]
+
** [http://www.uniprot.org/uniprot/O68040 O68040]
−
** [http://www.uniprot.org/uniprot/P15254 P15254]
+
** [http://www.uniprot.org/uniprot/P78773 P78773]
−
** [http://www.uniprot.org/uniprot/O14228 O14228]
 
−
** [http://www.uniprot.org/uniprot/P35421 P35421]
 
−
** [http://www.uniprot.org/uniprot/Q9ZB07 Q9ZB07]
 
−
** [http://www.uniprot.org/uniprot/Q9ZB06 Q9ZB06]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphoribosylformylglycinamide synthetase}}
+
{{#set: common-name=acetyl-coa synthetase (amp-forming)|acetate-coa ligase}}
−
{{#set: ec-number=ec-6.3.5.3}}
+
{{#set: ec-number=ec-6.2.1.1}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction ACETATE--COA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • acetate-coa ligase
    • acetyl-coa synthetase (amp-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1313, acetate conversion to acetyl-CoA: PWY0-1313
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6672, cis-genanyl-CoA degradation: PWY-6672
    • 4 reactions found over 9 reactions in the full pathway
  • PWY66-21, ethanol degradation II: PWY66-21
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-161, ethanol degradation III: PWY66-161
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 5 reactions found over 6 reactions in the full pathway
  • PWY66-162, ethanol degradation IV: PWY66-162
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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