Difference between revisions of "CPD-698"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSCHOL-RXN PHOSCHOL-RXN] == * direction: ** left-to-right * common-name: ** n-acylphosphatidyleth...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTATHIONINE-BETA-SYNTHASE-RXN CYSTATHIONINE-BETA-SYNTHASE-RXN] == * direction: ** reversible * co...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSCHOL-RXN PHOSCHOL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTATHIONINE-BETA-SYNTHASE-RXN CYSTATHIONINE-BETA-SYNTHASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** n-acylphosphatidylethanolamine-specific phospholipase d
+
** cystathionine β-synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.4 ec-3.1.4.4]
+
** [http://enzyme.expasy.org/EC/4.2.1.22 ec-4.2.1.22]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHATIDYLCHOLINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CHOLINE]][c] '''+''' 1 [[L-PHOSPHATIDATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[HOMO-CYS]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08019]]
+
* Gene: [[SJ15937]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20026]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15938]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7039]], phosphatidate metabolism, as a signaling molecule: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7039 PWY-7039]
+
* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSDEGR-PWY HOMOCYSDEGR-PWY]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-I9 PWY-I9]
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-3561]], choline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3561 PWY-3561]
+
* [[PWY-801]], homocysteine and cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[LIPASYN-PWY]], phospholipases: [http://metacyc.org/META/NEW-IMAGE?object=LIPASYN-PWY LIPASYN-PWY]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14446 14446]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10115 10115]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01310 R01310]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01290 R01290]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P20626 P20626]
+
** [http://www.uniprot.org/uniprot/P32232 P32232]
−
** [http://www.uniprot.org/uniprot/Q9Z4Q0 Q9Z4Q0]
+
** [http://www.uniprot.org/uniprot/P32582 P32582]
−
** [http://www.uniprot.org/uniprot/P93844 P93844]
+
** [http://www.uniprot.org/uniprot/P35520 P35520]
−
** [http://www.uniprot.org/uniprot/Q43007 Q43007]
+
** [http://www.uniprot.org/uniprot/Q9YCN5 Q9YCN5]
−
** [http://www.uniprot.org/uniprot/Q43270 Q43270]
+
** [http://www.uniprot.org/uniprot/Q12633 Q12633]
−
** [http://www.uniprot.org/uniprot/P93400 P93400]
+
** [http://www.uniprot.org/uniprot/P72662 P72662]
−
** [http://www.uniprot.org/uniprot/Q9T052 Q9T052]
+
** [http://www.uniprot.org/uniprot/O59701 O59701]
−
** [http://www.uniprot.org/uniprot/Q9T053 Q9T053]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q41142 Q41142]
+
{{#set: common-name=cystathionine &beta;-synthase}}
−
** [http://www.uniprot.org/uniprot/O04865 O04865]
+
{{#set: ec-number=ec-4.2.1.22}}
−
** [http://www.uniprot.org/uniprot/P70496 P70496]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/O74136 O74136]
 
−
** [http://www.uniprot.org/uniprot/O08684 O08684]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=n-acylphosphatidylethanolamine-specific phospholipase d}}
 
−
{{#set: ec-number=ec-3.1.4.4}}
 
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN

  • direction:
    • reversible
  • common-name:
    • cystathionine β-synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HOMOCYSDEGR-PWY, L-cysteine biosynthesis III (from L-homocysteine): HOMOCYSDEGR-PWY
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-I9, L-cysteine biosynthesis VI (from L-methionine): PWY-I9
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-801, homocysteine and cysteine interconversion: PWY-801
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-698&oldid=21721"