Difference between revisions of "2.4.1.198-RXN"
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(Created page with "Category:reaction == Reaction RXN-17114 == * direction: ** left-to-right * common-name: ** (2e,6z,9z,12z,15z,18z)-tetracosahexaenoyl-coa hydratase ** enoyl-coa hydratase *...") |
(Created page with "Category:reaction == Reaction PGLUCISOM-RXN == * direction: ** reversible * common-name: ** phosphoglucose isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1.9 e...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction PGLUCISOM-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** phosphoglucose isomerase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.3.1.9 ec-5.3.1.9] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[D-glucopyranose-6-phosphate]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ00085]] | |
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ08179]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * | + | == Pathway(s) == |
− | ** | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | *** | + | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): |
− | * | + | ** '''10''' reactions found over '''13''' reactions in the full pathway |
− | ** | + | * [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): |
− | *** | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
− | ** | + | * [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: |
− | *** | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
− | * | + | * [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): |
− | ** | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
− | *** | + | * [[PWY-3801]], sucrose degradation II (sucrose synthase): |
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-621]], sucrose degradation III (sucrose invertase): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[P122-PWY]], heterolactic fermentation: | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-7347]], sucrose biosynthesis III: | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[P341-PWY]], glycolysis V (Pyrococcus): | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY66-399]], gluconeogenesis III: | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5659]], GDP-mannose biosynthesis: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[RUMP-PWY]], formaldehyde oxidation I: | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6981]], chitin biosynthesis: | ||
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6992]], 1,5-anhydrofructose degradation: | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[UDPNAGSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis I: | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]], gluconeogenesis I: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-622]], starch biosynthesis: | ||
+ | ** '''2''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-5054]], D-sorbitol biosynthesis I: | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7238]], sucrose biosynthesis II: | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
</div> | </div> | ||
− | |||
− | |||
− | |||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec- | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11819 11819] |
− | {{#set: nb gene associated= | + | * LIGAND-RXN: |
− | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00771 R00771] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P06744 P06744] | ||
+ | ** [http://www.uniprot.org/uniprot/P28718 P28718] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7LZP0 Q7LZP0] | ||
+ | ** [http://www.uniprot.org/uniprot/O83488 O83488] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTW1 Q9JTW1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59000 Q59000] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PMD4 Q9PMD4] | ||
+ | ** [http://www.uniprot.org/uniprot/O25781 O25781] | ||
+ | ** [http://www.uniprot.org/uniprot/O84382 O84382] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JSS6 Q9JSS6] | ||
+ | ** [http://www.uniprot.org/uniprot/P81181 P81181] | ||
+ | ** [http://www.uniprot.org/uniprot/P08059 P08059] | ||
+ | ** [http://www.uniprot.org/uniprot/P50309 P50309] | ||
+ | ** [http://www.uniprot.org/uniprot/P13376 P13376] | ||
+ | ** [http://www.uniprot.org/uniprot/P13375 P13375] | ||
+ | ** [http://www.uniprot.org/uniprot/P12709 P12709] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6T1 P0A6T1] | ||
+ | ** [http://www.uniprot.org/uniprot/P06745 P06745] | ||
+ | ** [http://www.uniprot.org/uniprot/P13377 P13377] | ||
+ | ** [http://www.uniprot.org/uniprot/P12341 P12341] | ||
+ | ** [http://www.uniprot.org/uniprot/P18240 P18240] | ||
+ | ** [http://www.uniprot.org/uniprot/P29333 P29333] | ||
+ | ** [http://www.uniprot.org/uniprot/P34796 P34796] | ||
+ | ** [http://www.uniprot.org/uniprot/P34797 P34797] | ||
+ | ** [http://www.uniprot.org/uniprot/P54240 P54240] | ||
+ | ** [http://www.uniprot.org/uniprot/P54242 P54242] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59088 Q59088] | ||
+ | ** [http://www.uniprot.org/uniprot/P78033 P78033] | ||
+ | ** [http://www.uniprot.org/uniprot/P52983 P52983] | ||
+ | ** [http://www.uniprot.org/uniprot/P49105 P49105] | ||
+ | ** [http://www.uniprot.org/uniprot/P42862 P42862] | ||
+ | ** [http://www.uniprot.org/uniprot/P42863 P42863] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SB57 Q9SB57] | ||
+ | ** [http://www.uniprot.org/uniprot/O82058 O82058] | ||
+ | ** [http://www.uniprot.org/uniprot/O82059 O82059] | ||
+ | ** [http://www.uniprot.org/uniprot/O61113 O61113] | ||
+ | ** [http://www.uniprot.org/uniprot/P78917 P78917] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RMC1 Q9RMC1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X670 Q9X670] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=phosphoglucose isomerase}} | ||
+ | {{#set: ec-number=ec-5.3.1.9}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=23}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:00, 14 January 2021
Contents
Reaction PGLUCISOM-RXN
- direction:
- reversible
- common-name:
- phosphoglucose isomerase
- ec-number:
Reaction formula
- 1 D-glucopyranose-6-phosphate[c] <=> 1 FRUCTOSE-6P[c]
Gene(s) associated with this reaction
- Gene: SJ00085
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08179
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
- 10 reactions found over 13 reactions in the full pathway
- SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis):
- 6 reactions found over 7 reactions in the full pathway
- PWY-5514, UDP-N-acetyl-D-galactosamine biosynthesis II:
- 5 reactions found over 7 reactions in the full pathway
- PWY-7385, 1,3-propanediol biosynthesis (engineered):
- 7 reactions found over 9 reactions in the full pathway
- PWY-3801, sucrose degradation II (sucrose synthase):
- 4 reactions found over 5 reactions in the full pathway
- PWY-621, sucrose degradation III (sucrose invertase):
- 3 reactions found over 4 reactions in the full pathway
- P122-PWY, heterolactic fermentation:
- 16 reactions found over 18 reactions in the full pathway
- PWY-7347, sucrose biosynthesis III:
- 1 reactions found over 3 reactions in the full pathway
- P341-PWY, glycolysis V (Pyrococcus):
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
- 10 reactions found over 11 reactions in the full pathway
- PWY66-399, gluconeogenesis III:
- 11 reactions found over 12 reactions in the full pathway
- PWY-5384, sucrose degradation IV (sucrose phosphorylase):
- 3 reactions found over 4 reactions in the full pathway
- PWY-5659, GDP-mannose biosynthesis:
- 3 reactions found over 4 reactions in the full pathway
- RUMP-PWY, formaldehyde oxidation I:
- 4 reactions found over 6 reactions in the full pathway
- PWY-6981, chitin biosynthesis:
- 4 reactions found over 3 reactions in the full pathway
- PWY-6992, 1,5-anhydrofructose degradation:
- 4 reactions found over 5 reactions in the full pathway
- UDPNAGSYN-PWY, UDP-N-acetyl-D-glucosamine biosynthesis I:
- 4 reactions found over 5 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt:
- 12 reactions found over 15 reactions in the full pathway
- GLUCONEO-PWY, gluconeogenesis I:
- 12 reactions found over 13 reactions in the full pathway
- PWY-622, starch biosynthesis:
- 2 reactions found over 10 reactions in the full pathway
- PWY-5054, D-sorbitol biosynthesis I:
- 1 reactions found over 3 reactions in the full pathway
- PWY-7238, sucrose biosynthesis II:
- 5 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: