Difference between revisions of "TRNAs-with-queuine"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYC3PDEHYDROGBIOSYN-RXN GLYC3PDEHYDROGBIOSYN-RXN] == * direction: ** left-to-right * common-name:...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] == * direction: ** left-to-right * common-name: ** 3-oxoacyl coa thiolase ** a...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYC3PDEHYDROGBIOSYN-RXN GLYC3PDEHYDROGBIOSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glycerol-3-phosphate dehydrogenase
+
** 3-oxoacyl coa thiolase
−
** glycerol-3-phosphate dehydrogenase [nad+]
+
** acetyl-coa c-acyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.94 ec-1.1.1.94]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[CPD-13699]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-13700]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00878]]
+
* Gene: [[SJ16470]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ21817]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[SJ16475]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14898]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ21818]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09371]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7902]], glucosylglycerol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7902 PWY-7902]
+
* [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6945 PWY-6945]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''17''' reactions in the full pathway
−
* [[PWY-5981]], CDP-diacylglycerol biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5981 PWY-5981]
+
* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6946 PWY-6946]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''22''' reactions in the full pathway
−
* [[PWY0-1319]], CDP-diacylglycerol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1319 PWY0-1319]
+
* [[PWY-6948]], sitosterol degradation to androstenedione: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6948 PWY-6948]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-5667]], CDP-diacylglycerol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5667 PWY-5667]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11094 11094]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00844 R00844]
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05680 R05680]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glycerol-3-phosphate dehydrogenase [nad+]|glycerol-3-phosphate dehydrogenase}}
+
{{#set: common-name=3-oxoacyl coa thiolase|acetyl-coa c-acyltransferase}}
−
{{#set: ec-number=ec-1.1.1.94}}
+
{{#set: ec-number=ec-2.3.1.16}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN-12710

  • direction:
    • left-to-right
  • common-name:
    • 3-oxoacyl coa thiolase
    • acetyl-coa c-acyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6945, cholesterol degradation to androstenedione I (cholesterol oxidase): PWY-6945
    • 5 reactions found over 17 reactions in the full pathway
  • PWY-6946, cholesterol degradation to androstenedione II (cholesterol dehydrogenase): PWY-6946
    • 6 reactions found over 22 reactions in the full pathway
  • PWY-6948, sitosterol degradation to androstenedione: PWY-6948
    • 2 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TRNAs-with-queuine&oldid=21957"