Difference between revisions of "TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10267/NAD//T2-DECENOYL-COA/NADH/PROTON.43."
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(Created page with "Category:reaction == Reaction 2.1.1.135-RXN == * direction: ** left-to-right * common-name: ** methionine synthase reductase ** [methionine synthase] reductase * ec-number...") |
(Created page with "Category:reaction == Reaction ACETATE--COA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** acetate-coa ligase ** acetyl-coa synthetase (amp-forming) * ec-num...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction ACETATE--COA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** acetate-coa ligase |
− | ** | + | ** acetyl-coa synthetase (amp-forming) |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1] |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ08601]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16901]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY66-161]], ethanol degradation III: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7118]], chitin degradation to ethanol: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY66-162]], ethanol degradation IV: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY0-1313]], acetate conversion to acetyl-CoA: | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-6672]], cis-genanyl-CoA degradation: | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-21]], ethanol degradation II: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P27095 P27095] | ||
+ | ** [http://www.uniprot.org/uniprot/P31638 P31638] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12662 Q12662] | ||
+ | ** [http://www.uniprot.org/uniprot/P28812 P28812] | ||
+ | ** [http://www.uniprot.org/uniprot/P27550 P27550] | ||
+ | ** [http://www.uniprot.org/uniprot/O34613 O34613] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2] | ||
+ | ** [http://www.uniprot.org/uniprot/P36333 P36333] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01574 Q01574] | ||
+ | ** [http://www.uniprot.org/uniprot/P39062 P39062] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01576 Q01576] | ||
+ | ** [http://www.uniprot.org/uniprot/P52910 P52910] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55404 Q55404] | ||
+ | ** [http://www.uniprot.org/uniprot/P16928 P16928] | ||
+ | ** [http://www.uniprot.org/uniprot/P16929 P16929] | ||
+ | ** [http://www.uniprot.org/uniprot/O68040 O68040] | ||
+ | ** [http://www.uniprot.org/uniprot/P78773 P78773] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=acetate-coa ligase|acetyl-coa synthetase (amp-forming)}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-6.2.1.1}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:07, 14 January 2021
Contents
Reaction ACETATE--COA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- acetate-coa ligase
- acetyl-coa synthetase (amp-forming)
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ08601
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16901
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY66-161, ethanol degradation III:
- 2 reactions found over 3 reactions in the full pathway
- PWY-7118, chitin degradation to ethanol:
- 5 reactions found over 6 reactions in the full pathway
- PWY66-162, ethanol degradation IV:
- 3 reactions found over 3 reactions in the full pathway
- PWY0-1313, acetate conversion to acetyl-CoA:
- 1 reactions found over 1 reactions in the full pathway
- PWY-6672, cis-genanyl-CoA degradation:
- 4 reactions found over 9 reactions in the full pathway
- PWY66-21, ethanol degradation II:
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links