Difference between revisions of "SJ04074"
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(Created page with "Category:gene == Gene SJ04924 == * transcription-direction: ** positive * right-end-position: ** 44560 * left-end-position: ** 36112 * centisome-position: ** 36.8471 =...") |
(Created page with "Category:gene == Gene SJ02214 == * transcription-direction: ** positive * right-end-position: ** 96011 * left-end-position: ** 55580 * centisome-position: ** 39.7017 =...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ02214 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 96011 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 55580 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 39.7017 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[ACETYL-COA-CARBOXYLTRANSFER-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[BIOTIN-CARBOXYL-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[DALADALALIG-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[METHYLCROTONYL-COA-CARBOXYLASE-RXN]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''1''' reactions found over ''' | + | * [[PWY-7388]] |
− | * [[PWY- | + | ** '''7''' reactions found over '''11''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6679]] |
− | * [[PWY- | + | ** '''1''' reactions found over '''9''' reactions in the full pathway |
− | ** '''2''' reactions found over ''' | + | * [[PWY-5744]] |
− | * [[PWY- | + | ** '''4''' reactions found over '''13''' reactions in the full pathway |
− | ** '''2''' reactions found over ''' | + | * [[PWY-5743]] |
− | * [[PWY- | + | ** '''5''' reactions found over '''13''' reactions in the full pathway |
+ | * [[PWY-5789]] | ||
+ | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY0-1264]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7953]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6386]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6387]] | ||
** '''2''' reactions found over '''8''' reactions in the full pathway | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
− | * [[PWY | + | * [[LEU-DEG2-PWY]] |
− | ** ''' | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=96011}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=55580}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=39.7017 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=10}} |
Revision as of 11:09, 15 January 2021
Contents
Gene SJ02214
- transcription-direction:
- positive
- right-end-position:
- 96011
- left-end-position:
- 55580
- centisome-position:
- 39.7017
Organism(s) associated with this gene
Reaction(s) associated
- ACETYL-COA-CARBOXYLTRANSFER-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- BIOTIN-CARBOXYL-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- DALADALALIG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- METHYLCROTONYL-COA-CARBOXYLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7388
- 7 reactions found over 11 reactions in the full pathway
- PWY-6679
- 1 reactions found over 9 reactions in the full pathway
- PWY-5744
- 4 reactions found over 13 reactions in the full pathway
- PWY-5743
- 5 reactions found over 13 reactions in the full pathway
- PWY-5789
- 8 reactions found over 18 reactions in the full pathway
- PWY0-1264
- 3 reactions found over 4 reactions in the full pathway
- PWY-7953
- 2 reactions found over 8 reactions in the full pathway
- PWY-6386
- 2 reactions found over 8 reactions in the full pathway
- PWY-6387
- 2 reactions found over 8 reactions in the full pathway
- LEU-DEG2-PWY
- 4 reactions found over 6 reactions in the full pathway