Difference between revisions of "ExchangeSeed-PROTON"

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(Created page with "Category:reaction == Reaction FRUCTOKINASE-RXN == * direction: ** left-to-right * common-name: ** manno(fructo)kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.4...")
(Created page with "Category:reaction == Reaction ExchangeSeed-NITRATE == * direction: ** reversible == Reaction formula == * 1.0 NITRATE[C-BOUNDARY] '''<=>''' 1.0 NITRATE[e] == Gene(...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FRUCTOKINASE-RXN ==
+
== Reaction ExchangeSeed-NITRATE ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** manno(fructo)kinase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.1.4 ec-2.7.1.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[BETA-D-FRUCTOSE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[NITRATE]][C-BOUNDARY] '''<=>''' 1.0 [[NITRATE]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12224]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04919]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3801]], sucrose degradation II (sucrose synthase):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-621]], sucrose degradation III (sucrose invertase):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-4101]], D-sorbitol degradation I:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[SUCROSEUTIL2-PWY]], sucrose degradation VII (sucrose 3-dehydrogenase):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6531]], mannitol cycle:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[SUCUTIL-PWY]], sucrose degradation I (sucrose phosphotransferase):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16126 16126]
+
{{#set: nb gene associated=0}}
−
* LIGAND-RXN:
+
{{#set: nb pathway associated=0}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00760 R00760]
+
{{#set: reconstruction category=manual}}
−
* UNIPROT:
+
{{#set: reconstruction tool=curation}}
−
** [http://www.uniprot.org/uniprot/Q09124 Q09124]
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
−
** [http://www.uniprot.org/uniprot/P24261 P24261]
+
{{#set: reconstruction source=import_from_medium}}
−
** [http://www.uniprot.org/uniprot/Q03417 Q03417]
 
−
** [http://www.uniprot.org/uniprot/Q9V0T7 Q9V0T7]
 
−
** [http://www.uniprot.org/uniprot/Q9CFI9 Q9CFI9]
 
−
** [http://www.uniprot.org/uniprot/P22824 P22824]
 
−
** [http://www.uniprot.org/uniprot/P26420 P26420]
 
−
** [http://www.uniprot.org/uniprot/P26984 P26984]
 
−
** [http://www.uniprot.org/uniprot/P37829 P37829]
 
−
** [http://www.uniprot.org/uniprot/P43468 P43468]
 
−
** [http://www.uniprot.org/uniprot/P73521 P73521]
 
−
** [http://www.uniprot.org/uniprot/O82616 O82616]
 
−
** [http://www.uniprot.org/uniprot/O04897 O04897]
 
−
** [http://www.uniprot.org/uniprot/Q42645 Q42645]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=manno(fructo)kinase}}
 
−
{{#set: ec-number=ec-2.7.1.4}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=8}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
 

Revision as of 19:00, 14 January 2021

Reaction ExchangeSeed-NITRATE

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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