Difference between revisions of "2.7.7.44-RXN"

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(Created page with "Category:reaction == Reaction 3.2.1.39-RXN == * direction: ** left-to-right * common-name: ** glucan endo-1,3-beta-d-glucosidase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction CHOLINE-KINASE-RXN == * direction: ** left-to-right * common-name: ** choline kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.32 ec...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.39-RXN ==
+
== Reaction CHOLINE-KINASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glucan endo-1,3-beta-d-glucosidase
+
** choline kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.39 ec-3.2.1.39]
+
** [http://enzyme.expasy.org/EC/2.7.1.32 ec-2.7.1.32]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[Glucopyranose]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CHOLINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ18340]]
−
* Gene: [[SJ18897]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00941]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06638]]
+
* Gene: [[SJ15347]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14973]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11958]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05533]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16402]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05257]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7782]], plasmalogen biosynthesis:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY3O-450]], phosphatidylcholine biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae):
 +
** '''2''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-7886]], cell-surface glycoconjugate-linked phosphocholine biosynthesis:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12838 12838]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01021 R01021]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M1Y3 Q7M1Y3]
+
** [http://www.uniprot.org/uniprot/P20485 P20485]
−
** [http://www.uniprot.org/uniprot/P23546 P23546]
+
** [http://www.uniprot.org/uniprot/Q01134 Q01134]
−
** [http://www.uniprot.org/uniprot/Q7M1Y2 Q7M1Y2]
+
** [http://www.uniprot.org/uniprot/Q42809 Q42809]
−
** [http://www.uniprot.org/uniprot/P23547 P23547]
+
** [http://www.uniprot.org/uniprot/Q42810 Q42810]
−
** [http://www.uniprot.org/uniprot/P27666 P27666]
+
** [http://www.uniprot.org/uniprot/Q42811 Q42811]
−
** [http://www.uniprot.org/uniprot/Q7M1Y5 Q7M1Y5]
 
−
** [http://www.uniprot.org/uniprot/Q7M1Y4 Q7M1Y4]
 
−
** [http://www.uniprot.org/uniprot/P34742 P34742]
 
−
** [http://www.uniprot.org/uniprot/Q02437 Q02437]
 
−
** [http://www.uniprot.org/uniprot/Q45095 Q45095]
 
−
** [http://www.uniprot.org/uniprot/P33157 P33157]
 
−
** [http://www.uniprot.org/uniprot/Q41181 Q41181]
 
−
** [http://www.uniprot.org/uniprot/P15737 P15737]
 
−
** [http://www.uniprot.org/uniprot/P23432 P23432]
 
−
** [http://www.uniprot.org/uniprot/P23433 P23433]
 
−
** [http://www.uniprot.org/uniprot/P36401 P36401]
 
−
** [http://www.uniprot.org/uniprot/Q40753 Q40753]
 
−
** [http://www.uniprot.org/uniprot/Q7M1V4 Q7M1V4]
 
−
** [http://www.uniprot.org/uniprot/Q02126 Q02126]
 
−
** [http://www.uniprot.org/uniprot/Q06773 Q06773]
 
−
** [http://www.uniprot.org/uniprot/P52401 P52401]
 
−
** [http://www.uniprot.org/uniprot/Q02438 Q02438]
 
−
** [http://www.uniprot.org/uniprot/Q42944 Q42944]
 
−
** [http://www.uniprot.org/uniprot/P52400 P52400]
 
−
** [http://www.uniprot.org/uniprot/P52402 P52402]
 
−
** [http://www.uniprot.org/uniprot/Q9R650 Q9R650]
 
−
** [http://www.uniprot.org/uniprot/P52398 P52398]
 
−
** [http://www.uniprot.org/uniprot/P52399 P52399]
 
−
** [http://www.uniprot.org/uniprot/O50007 O50007]
 
−
** [http://www.uniprot.org/uniprot/Q43851 Q43851]
 
−
** [http://www.uniprot.org/uniprot/Q03467 Q03467]
 
−
** [http://www.uniprot.org/uniprot/Q03773 Q03773]
 
−
** [http://www.uniprot.org/uniprot/O82063 O82063]
 
−
** [http://www.uniprot.org/uniprot/O23783 O23783]
 
−
** [http://www.uniprot.org/uniprot/Q9M2M3 Q9M2M3]
 
−
** [http://www.uniprot.org/uniprot/Q9M4A9 Q9M4A9]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glucan endo-1,3-beta-d-glucosidase}}
+
{{#set: common-name=choline kinase}}
−
{{#set: ec-number=ec-3.2.1.39}}
+
{{#set: ec-number=ec-2.7.1.32}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:00, 14 January 2021

Reaction CHOLINE-KINASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • choline kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7782, plasmalogen biosynthesis:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY3O-450, phosphatidylcholine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7818, type IV lipoteichoic acid biosynthesis (S. pneumoniae):
    • 2 reactions found over 19 reactions in the full pathway
  • PWY-7886, cell-surface glycoconjugate-linked phosphocholine biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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