Difference between revisions of "HISTIDINE-DECARBOXYLASE-RXN"

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(Created page with "Category:reaction == Reaction 2.7.9.3-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.7.9.3 ec-2.7.9.3] == Reaction formula == * 1 AT...")
(Created page with "Category:reaction == Reaction RXN0-949 == * direction: ** left-to-right * common-name: ** lipoyl synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.8 ec-2.8.1.8]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.7.9.3-RXN ==
+
== Reaction RXN0-949 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** lipoyl synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.9.3 ec-2.7.9.3]
+
** [http://enzyme.expasy.org/EC/2.8.1.8 ec-2.8.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[SE-2]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SEPO3]][c]
+
* 1 [[Octanoylated-domains]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 2 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 2 [[CH33ADO]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08249]]
+
* Gene: [[SJ03663]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ04393]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11692]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria):
+
* [[PWY0-1275]], lipoate biosynthesis and incorporation II:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-501]], lipoate biosynthesis and incorporation I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6987]], lipoate biosynthesis and incorporation III (Bacillus):
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18738 18738]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16586 16586]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03595 R03595]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07767 R07767]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PMF9 Q9PMF9]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.7.9.3}}
+
{{#set: common-name=lipoyl synthase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-2.8.1.8}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:00, 14 January 2021

Reaction RXN0-949

  • direction:
    • left-to-right
  • common-name:
    • lipoyl synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1275, lipoate biosynthesis and incorporation II:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-501, lipoate biosynthesis and incorporation I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6987, lipoate biosynthesis and incorporation III (Bacillus):
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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