Difference between revisions of "LINOLEOYL-RXN"
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(Created page with "Category:reaction == Reaction DIHYDLIPACETRANS-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.12 ec-2.3.1.12] == Reaction formula...") |
(Created page with "Category:reaction == Reaction RIBOFLAVINSYNREDUC-RXN == * direction: ** left-to-right * common-name: ** 5-amino-6-(5-phosphoribosylamino)uracil reductase * ec-number: ** [...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction RIBOFLAVINSYNREDUC-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** 5-amino-6-(5-phosphoribosylamino)uracil reductase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.193 ec-1.1.1.193] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CPD-602]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-1086]][c] '''+''' 1 [[NADP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ22508]] | |
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02182]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | * Gene: [[SJ17550]] |
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | |||
− | *** Source: [[ | ||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17847 17847] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03458 R03458] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=5-amino-6-(5-phosphoribosylamino)uracil reductase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-1.1.1.193}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=3}} |
+ | {{#set: nb pathway associated=1}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:00, 14 January 2021
Contents
Reaction RIBOFLAVINSYNREDUC-RXN
- direction:
- left-to-right
- common-name:
- 5-amino-6-(5-phosphoribosylamino)uracil reductase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ22508
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ02182
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ17550
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
- 8 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links