Difference between revisions of "RXN-13061"

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(Created page with "Category:reaction == Reaction PHENYLALANINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** phenylalanine-trna ligase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction CHORISMATEMUT-RXN == * direction: ** reversible * common-name: ** chorismate mutase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.99.5 ec-...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHENYLALANINE--TRNA-LIGASE-RXN ==
+
== Reaction CHORISMATEMUT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phenylalanine-trna ligase
+
** chorismate mutase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.20 ec-6.1.1.20]
+
** [http://enzyme.expasy.org/EC/5.4.99.5 ec-5.4.99.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CHORISMATE]][c] '''<=>''' 1 [[PREPHENATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ00045]]
−
* Gene: [[SJ04988]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07745]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20176]]
+
* Gene: [[SJ07700]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20825]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10005]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-3461]], L-tyrosine biosynthesis II:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6120]], L-tyrosine biosynthesis III:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PHESYN]], L-phenylalanine biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7626]], bacilysin biosynthesis:
 +
** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-3462]], L-phenylalanine biosynthesis II:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[TYRSYN]], L-tyrosine biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6627]], salinosporamide A biosynthesis:
 +
** '''3''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19414 19414]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13900 13900]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01715 R01715]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P94283 P94283]
+
** [http://www.uniprot.org/uniprot/P19080 P19080]
−
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
+
** [http://www.uniprot.org/uniprot/P27603 P27603]
−
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
+
** [http://www.uniprot.org/uniprot/P32178 P32178]
−
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
+
** [http://www.uniprot.org/uniprot/P43900 P43900]
−
** [http://www.uniprot.org/uniprot/P56145 P56145]
+
** [http://www.uniprot.org/uniprot/Q9RQV7 Q9RQV7]
−
** [http://www.uniprot.org/uniprot/O67620 O67620]
+
** [http://www.uniprot.org/uniprot/P21204 P21204]
−
** [http://www.uniprot.org/uniprot/O73984 O73984]
+
** [http://www.uniprot.org/uniprot/Q58029 Q58029]
−
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
+
** [http://www.uniprot.org/uniprot/Q57696 Q57696]
−
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
+
** [http://www.uniprot.org/uniprot/P43902 P43902]
−
** [http://www.uniprot.org/uniprot/P56146 P56146]
+
** [http://www.uniprot.org/uniprot/Q9PII3 Q9PII3]
−
** [http://www.uniprot.org/uniprot/O27545 O27545]
+
** [http://www.uniprot.org/uniprot/P0A9J8 P0A9J8]
−
** [http://www.uniprot.org/uniprot/O26837 O26837]
+
** [http://www.uniprot.org/uniprot/P07023 P07023]
−
** [http://www.uniprot.org/uniprot/O58391 O58391]
+
** [http://www.uniprot.org/uniprot/Q02286 Q02286]
−
** [http://www.uniprot.org/uniprot/O83938 O83938]
+
** [http://www.uniprot.org/uniprot/Q02287 Q02287]
−
** [http://www.uniprot.org/uniprot/P47436 P47436]
+
** [http://www.uniprot.org/uniprot/P42738 P42738]
−
** [http://www.uniprot.org/uniprot/O67087 O67087]
+
** [http://www.uniprot.org/uniprot/O22409 O22409]
−
** [http://www.uniprot.org/uniprot/O83059 O83059]
+
** [http://www.uniprot.org/uniprot/O22410 O22410]
−
** [http://www.uniprot.org/uniprot/O84843 O84843]
 
−
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 
−
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 
−
** [http://www.uniprot.org/uniprot/P47437 P47437]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 
−
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 
−
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 
−
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 
−
** [http://www.uniprot.org/uniprot/P43819 P43819]
 
−
** [http://www.uniprot.org/uniprot/P94282 P94282]
 
−
** [http://www.uniprot.org/uniprot/O84481 O84481]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 
−
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 
−
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 
−
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 
−
** [http://www.uniprot.org/uniprot/P43820 P43820]
 
−
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 
−
** [http://www.uniprot.org/uniprot/P15434 P15434]
 
−
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 
−
** [http://www.uniprot.org/uniprot/P37984 P37984]
 
−
** [http://www.uniprot.org/uniprot/P51346 P51346]
 
−
** [http://www.uniprot.org/uniprot/P75563 P75563]
 
−
** [http://www.uniprot.org/uniprot/P75564 P75564]
 
−
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 
−
** [http://www.uniprot.org/uniprot/P95960 P95960]
 
−
** [http://www.uniprot.org/uniprot/P95961 P95961]
 
−
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 
−
** [http://www.uniprot.org/uniprot/P08312 P08312]
 
−
** [http://www.uniprot.org/uniprot/P07395 P07395]
 
−
** [http://www.uniprot.org/uniprot/O42870 O42870]
 
−
** [http://www.uniprot.org/uniprot/O13432 O13432]
 
−
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 
−
** [http://www.uniprot.org/uniprot/O42849 O42849]
 
−
** [http://www.uniprot.org/uniprot/P17921 P17921]
 
−
** [http://www.uniprot.org/uniprot/P17922 P17922]
 
−
** [http://www.uniprot.org/uniprot/P15625 P15625]
 
−
** [http://www.uniprot.org/uniprot/P08425 P08425]
 
−
** [http://www.uniprot.org/uniprot/P15624 P15624]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=phenylalanine-trna ligase}}
+
{{#set: common-name=chorismate mutase}}
−
{{#set: ec-number=ec-6.1.1.20}}
+
{{#set: ec-number=ec-5.4.99.5}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:01, 14 January 2021

Reaction CHORISMATEMUT-RXN

  • direction:
    • reversible
  • common-name:
    • chorismate mutase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3461, L-tyrosine biosynthesis II:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6120, L-tyrosine biosynthesis III:
    • 2 reactions found over 3 reactions in the full pathway
  • PHESYN, L-phenylalanine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7626, bacilysin biosynthesis:
    • 1 reactions found over 10 reactions in the full pathway
  • PWY-3462, L-phenylalanine biosynthesis II:
    • 2 reactions found over 3 reactions in the full pathway
  • TYRSYN, L-tyrosine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6627, salinosporamide A biosynthesis:
    • 3 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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