Difference between revisions of "RNA-LIGASE-ATP-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-12978 == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-chain fatty acid-coa ligase * ec-number: ** [http://...") |
(Created page with "Category:reaction == Reaction RXN-8675 == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase * synonymous: ** uroporph...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-8675 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase |
− | ** | + | * synonymous: |
− | * | + | ** uroporphyrinogen methyltransferase |
− | ** | + | ** uroporphyrinogen-iii methyltransferase |
+ | ** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase | ||
+ | ** sira | ||
+ | ** adenosylmethionine-uroporphyrinogen iii methyltransferase | ||
+ | ** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect) | ||
+ | ** uroporphyrin-iii c-methyltransferase (incorrect) | ||
+ | ** cysg | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ12313]] | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): | ||
+ | ** '''2''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): | ||
+ | ** '''4''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5196]], factor 430 biosynthesis: | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5194]], siroheme biosynthesis: | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}} |
− | {{#set: | + | {{#set: synonymous=uroporphyrinogen methyltransferase|uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen-iii methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|cysg|sira|adenosylmethionine-uroporphyrinogen iii methyltransferase|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:01, 14 January 2021
Contents
Reaction RXN-8675
- direction:
- left-to-right
- common-name:
- s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
- synonymous:
- uroporphyrinogen methyltransferase
- uroporphyrinogen-iii methyltransferase
- s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
- sira
- adenosylmethionine-uroporphyrinogen iii methyltransferase
- s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
- uroporphyrin-iii c-methyltransferase (incorrect)
- cysg
Reaction formula
- 1 CPD-9038[c] + 1 S-ADENOSYLMETHIONINE[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 DIHYDROSIROHYDROCHLORIN[c]
Gene(s) associated with this reaction
- Gene: SJ12313
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
- 2 reactions found over 13 reactions in the full pathway
- PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
- 4 reactions found over 15 reactions in the full pathway
- PWY-5196, factor 430 biosynthesis:
- 3 reactions found over 7 reactions in the full pathway
- PWY-5194, siroheme biosynthesis:
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links