Difference between revisions of "NTDP"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-12504 == * direction: ** left-to-right * common-name: ** trnahis guanylyltransferase == Reaction formula == * 1 App-his-tRNAs[c] '''+...") |
(Created page with "Category:reaction == Reaction ISOCIT-CLEAV-RXN == * direction: ** reversible * common-name: ** isocitrate lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ISOCIT-CLEAV-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** isocitrate lyase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1.3.1] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ10623]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02830]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ05932]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ05283]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13248 13248] |
− | {{#set: nb pathway associated= | + | * PIR: |
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P28467 P28467] | ||
+ | ** [http://www.uniprot.org/uniprot/P42449 P42449] | ||
+ | ** [http://www.uniprot.org/uniprot/P20699 P20699] | ||
+ | ** [http://www.uniprot.org/uniprot/O13439 O13439] | ||
+ | ** [http://www.uniprot.org/uniprot/P28299 P28299] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12031 Q12031] | ||
+ | ** [http://www.uniprot.org/uniprot/P46831 P46831] | ||
+ | ** [http://www.uniprot.org/uniprot/O24588 O24588] | ||
+ | ** [http://www.uniprot.org/uniprot/P49297 P49297] | ||
+ | ** [http://www.uniprot.org/uniprot/P45456 P45456] | ||
+ | ** [http://www.uniprot.org/uniprot/P45457 P45457] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39577 Q39577] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41084 Q41084] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43097 Q43097] | ||
+ | ** [http://www.uniprot.org/uniprot/P28240 P28240] | ||
+ | ** [http://www.uniprot.org/uniprot/P20014 P20014] | ||
+ | ** [http://www.uniprot.org/uniprot/P17069 P17069] | ||
+ | ** [http://www.uniprot.org/uniprot/P15479 P15479] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6] | ||
+ | ** [http://www.uniprot.org/uniprot/P25248 P25248] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=isocitrate lyase}} | ||
+ | {{#set: ec-number=ec-4.1.3.1}} | ||
+ | {{#set: nb gene associated=4}} | ||
+ | {{#set: nb pathway associated=3}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:02, 14 January 2021
Contents
Reaction ISOCIT-CLEAV-RXN
- direction:
- reversible
- common-name:
- isocitrate lyase
- ec-number:
Reaction formula
- 1 THREO-DS-ISO-CITRATE[c] <=> 1 GLYOX[c] + 1 SUC[c]
Gene(s) associated with this reaction
- Gene: SJ10623
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ02830
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ05932
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ05283
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
- 10 reactions found over 11 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
- 10 reactions found over 12 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle:
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- PIR:
- LIGAND-RXN:
- UNIPROT: