Difference between revisions of "GLYCOPHOSPHORYL-RXN"

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(Created page with "Category:reaction == Reaction RXN-14799 == * direction: ** left-to-right * common-name: ** 3-ketoacyl-coa thiolase ** acetyl-coa c-acyltransferase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction IGPSYN-RXN == * direction: ** left-to-right * common-name: ** indole-3-glycerol phosphate synthase * ec-number: ** [http://enzyme.expasy.org/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14799 ==
+
== Reaction IGPSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-ketoacyl-coa thiolase
+
** indole-3-glycerol phosphate synthase
−
** acetyl-coa c-acyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/4.1.1.48 ec-4.1.1.48]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[CPD-15687]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-15688]][c]
+
* 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09371]]
+
* Gene: [[SJ01083]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14898]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16470]]
+
* Gene: [[SJ17722]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21817]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ21818]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04593]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7340]], 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast):
+
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23477 23477]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P42393 P42393]
 +
** [http://www.uniprot.org/uniprot/P20577 P20577]
 +
** [http://www.uniprot.org/uniprot/P18304 P18304]
 +
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
 +
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
 +
** [http://www.uniprot.org/uniprot/P20578 P20578]
 +
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 +
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 +
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 +
** [http://www.uniprot.org/uniprot/P03964 P03964]
 +
** [http://www.uniprot.org/uniprot/P00910 P00910]
 +
** [http://www.uniprot.org/uniprot/P00909 P00909]
 +
** [http://www.uniprot.org/uniprot/P00911 P00911]
 +
** [http://www.uniprot.org/uniprot/P17217 P17217]
 +
** [http://www.uniprot.org/uniprot/P20409 P20409]
 +
** [http://www.uniprot.org/uniprot/P00937 P00937]
 +
** [http://www.uniprot.org/uniprot/P00908 P00908]
 +
** [http://www.uniprot.org/uniprot/P05328 P05328]
 +
** [http://www.uniprot.org/uniprot/P06531 P06531]
 +
** [http://www.uniprot.org/uniprot/P18483 P18483]
 +
** [http://www.uniprot.org/uniprot/P25170 P25170]
 +
** [http://www.uniprot.org/uniprot/P26938 P26938]
 +
** [http://www.uniprot.org/uniprot/P24773 P24773]
 +
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 +
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 +
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 +
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 +
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 +
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 +
** [http://www.uniprot.org/uniprot/P94327 P94327]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-ketoacyl-coa thiolase|acetyl-coa c-acyltransferase}}
+
{{#set: common-name=indole-3-glycerol phosphate synthase}}
−
{{#set: ec-number=ec-2.3.1.16}}
+
{{#set: ec-number=ec-4.1.1.48}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:06, 14 January 2021

Reaction IGPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • indole-3-glycerol phosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRPSYN-PWY, L-tryptophan biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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