Difference between revisions of "SJ21894"
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(Created page with "Category:gene == Gene SJ10275 == * transcription-direction: ** positive * right-end-position: ** 293791 * left-end-position: ** 293291 * centisome-position: ** 74.39667...") |
(Created page with "Category:gene == Gene SJ07909 == * transcription-direction: ** positive * right-end-position: ** 49612 * left-end-position: ** 35781 * centisome-position: ** 7.9968443...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ07909 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 49612 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 35781 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 7.9968443 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[ACOA120OR]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[ACOA140OR]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[ACOA160OR]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[ACOA40OR]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[ACOA80OR]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[RXN | + | * [[ACYLCOADEHYDROG-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[GLUTACONYL-COA-DECARBOXYLASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[GLUTARYL-COA-DEHYDROG-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[GLUTARYL-COA-DEHYDROGENASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
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</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[FAO-PWY]] | |
− | * [[ | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-7401]] | ||
+ | ** '''6''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5177]] | ||
** '''5''' reactions found over '''5''' reactions in the full pathway | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
− | * [[ | + | * [[P162-PWY]] |
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** '''7''' reactions found over '''11''' reactions in the full pathway | ** '''7''' reactions found over '''11''' reactions in the full pathway | ||
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{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=49612}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=35781}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=7.9968443 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=10}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
Revision as of 11:10, 15 January 2021
Contents
Gene SJ07909
- transcription-direction:
- positive
- right-end-position:
- 49612
- left-end-position:
- 35781
- centisome-position:
- 7.9968443
Organism(s) associated with this gene
Reaction(s) associated
- ACOA120OR
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ACOA140OR
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ACOA160OR
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ACOA40OR
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ACOA80OR
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ACYLCOADEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLUTACONYL-COA-DECARBOXYLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLUTARYL-COA-DEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLUTARYL-COA-DEHYDROGENASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- FAO-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY-7401
- 6 reactions found over 15 reactions in the full pathway
- PWY-5177
- 5 reactions found over 5 reactions in the full pathway
- P162-PWY
- 7 reactions found over 11 reactions in the full pathway