Difference between revisions of "SUCCCOASYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-14275 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19] == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction LYSINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** lysine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14275 ==
+
== Reaction LYSINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** lysine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19]
+
** [http://enzyme.expasy.org/EC/6.1.1.6 ec-6.1.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-14916]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD0-2106]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ21008]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12237]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21009]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31196 31196]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20793 20793]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04745 R04745]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P41258 P41258]
 +
** [http://www.uniprot.org/uniprot/P46861 P46861]
 +
** [http://www.uniprot.org/uniprot/P47382 P47382]
 +
** [http://www.uniprot.org/uniprot/O57963 O57963]
 +
** [http://www.uniprot.org/uniprot/O51603 O51603]
 +
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
 +
** [http://www.uniprot.org/uniprot/O83650 O83650]
 +
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
 +
** [http://www.uniprot.org/uniprot/P43825 P43825]
 +
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
 +
** [http://www.uniprot.org/uniprot/O84786 O84786]
 +
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
 +
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
 +
** [http://www.uniprot.org/uniprot/P56126 P56126]
 +
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
 +
** [http://www.uniprot.org/uniprot/O67258 O67258]
 +
** [http://www.uniprot.org/uniprot/O84002 O84002]
 +
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
 +
** [http://www.uniprot.org/uniprot/P32048 P32048]
 +
** [http://www.uniprot.org/uniprot/P37879 P37879]
 +
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
 +
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
 +
** [http://www.uniprot.org/uniprot/P37477 P37477]
 +
** [http://www.uniprot.org/uniprot/P75500 P75500]
 +
** [http://www.uniprot.org/uniprot/P95970 P95970]
 +
** [http://www.uniprot.org/uniprot/P73443 P73443]
 +
** [http://www.uniprot.org/uniprot/P15180 P15180]
 +
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
 +
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
 +
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
 +
** [http://www.uniprot.org/uniprot/O74059 O74059]
 +
** [http://www.uniprot.org/uniprot/O30522 O30522]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.1.1.m19}}
+
{{#set: common-name=lysine-trna ligase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-6.1.1.6}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:20, 15 January 2021

Reaction LYSINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • lysine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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