Difference between revisions of "PSERTRANSAM-RXN"

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(Created page with "Category:reaction == Reaction RXN-773 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13] == Reaction formula == * 1 CPD-71...")
(Created page with "Category:reaction == Reaction 3.2.2.23-RXN == * direction: ** left-to-right * common-name: ** oxidized purine nucleobase lesion dna n-glycosylase ** formamidopyrimidine dn...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-773 ==
+
== Reaction 3.2.2.23-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** oxidized purine nucleobase lesion dna n-glycosylase
 +
** formamidopyrimidine dna glycosylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13]
+
** [http://enzyme.expasy.org/EC/3.2.2.23 ec-3.2.2.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-710]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-712]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[DNA-containing-diamino-hydro-formamidops]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-16491]][c] '''+''' 1 [[DNA-containing-aPurinic-Sites]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05072]]
+
* Gene: [[SJ18415]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ12532]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2582]], brassinosteroid biosynthesis II:
 
−
** '''4''' reactions found over '''21''' reactions in the full pathway
 
−
* [[PWY-699]], brassinosteroid biosynthesis I:
 
−
** '''3''' reactions found over '''25''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07454 R07454]
+
** [http://www.uniprot.org/uniprot/P44948 P44948]
 +
** [http://www.uniprot.org/uniprot/P57014 P57014]
 +
** [http://www.uniprot.org/uniprot/P05523 P05523]
 +
** [http://www.uniprot.org/uniprot/P19210 P19210]
 +
** [http://www.uniprot.org/uniprot/P74290 P74290]
 +
** [http://www.uniprot.org/uniprot/O69470 O69470]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.14.13}}
+
{{#set: common-name=formamidopyrimidine dna glycosylase|oxidized purine nucleobase lesion dna n-glycosylase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-3.2.2.23}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:21, 15 January 2021

Reaction 3.2.2.23-RXN

  • direction:
    • left-to-right
  • common-name:
    • oxidized purine nucleobase lesion dna n-glycosylase
    • formamidopyrimidine dna glycosylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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