Difference between revisions of "RXN-15513"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction SULFITE-REDUCTASE-FERREDOXIN-RXN == * direction: ** left-to-right * common-name: ** hydrogen sulfide:ferredoxin oxidoreductase * ec-number: *...") |
(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-II-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase ** gtp cyclohydrolase ii * ec-number: ** [http://...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction GTP-CYCLOHYDRO-II-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** gtp cyclohydrolase |
+ | ** gtp cyclohydrolase ii | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25] |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ17329]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ05001]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
Line 17: | Line 21: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): |
− | ** ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6168]], flavin biosynthesis III (fungi): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
Line 24: | Line 32: | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23705 23705] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O08315 O08315] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O66679 O66679] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4] |
+ | ** [http://www.uniprot.org/uniprot/O25484 O25484] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8] | ||
+ | ** [http://www.uniprot.org/uniprot/P43525 P43525] | ||
+ | ** [http://www.uniprot.org/uniprot/P17620 P17620] | ||
+ | ** [http://www.uniprot.org/uniprot/P38066 P38066] | ||
+ | ** [http://www.uniprot.org/uniprot/P50139 P50139] | ||
+ | ** [http://www.uniprot.org/uniprot/P74104 P74104] | ||
+ | ** [http://www.uniprot.org/uniprot/O24019 O24019] | ||
+ | ** [http://www.uniprot.org/uniprot/P51695 P51695] | ||
+ | ** [http://www.uniprot.org/uniprot/P50855 P50855] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=gtp cyclohydrolase ii|gtp cyclohydrolase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-3.5.4.25}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:25, 15 January 2021
Contents
Reaction GTP-CYCLOHYDRO-II-RXN
- direction:
- left-to-right
- common-name:
- gtp cyclohydrolase
- gtp cyclohydrolase ii
- ec-number:
Reaction formula
- 1 GTP[c] + 3 WATER[c] => 1 DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR[c] + 1 FORMATE[c] + 1 PPI[c] + 2 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ17329
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ05001
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
- 8 reactions found over 9 reactions in the full pathway
- PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
- 4 reactions found over 5 reactions in the full pathway
- PWY-6168, flavin biosynthesis III (fungi):
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links