Difference between revisions of "2PGADEHYDRAT-RXN"
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(Created page with "Category:reaction == Reaction RXN-16153 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199] == Reaction formula == * 1 ...") |
(Created page with "Category:reaction == Reaction 3.2.1.8-RXN == * direction: ** left-to-right * common-name: ** endo-1,4-beta-xylanase ** endo-1,4-β-xylanase * ec-number: ** [http://enz...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction 3.2.1.8-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** endo-1,4-beta-xylanase | ||
+ | ** endo-1,4-β-xylanase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2 | + | ** [http://enzyme.expasy.org/EC/3.2.1.8 ec-3.2.1.8] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[1-4-beta-Xylan]][c] '''+''' n [[WATER]][c] '''=>''' n [[1-4-D-xylooligosaccharides]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ06513]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ10590]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6784]], cellulose and hemicellulose degradation (cellulolosome): |
− | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P10478 P10478] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R5M7 Q9R5M7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M519 Q7M519] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M520 Q7M520] | ||
+ | ** [http://www.uniprot.org/uniprot/P35809 P35809] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M513 Q7M513] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M0W8 Q7M0W8] | ||
+ | ** [http://www.uniprot.org/uniprot/P23556 P23556] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4V8 Q7M4V8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R5M6 Q9R5M6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M0X0 Q7M0X0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M0W9 Q7M0W9] | ||
+ | ** [http://www.uniprot.org/uniprot/P45703 P45703] | ||
+ | ** [http://www.uniprot.org/uniprot/P18429 P18429] | ||
+ | ** [http://www.uniprot.org/uniprot/P40943 P40943] | ||
+ | ** [http://www.uniprot.org/uniprot/P54865 P54865] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00177 Q00177] | ||
+ | ** [http://www.uniprot.org/uniprot/P79046 P79046] | ||
+ | ** [http://www.uniprot.org/uniprot/O83007 O83007] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UUQ2 Q9UUQ2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9HFA4 Q9HFA4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9F1V3 Q9F1V3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9AJR9 Q9AJR9] | ||
+ | ** [http://www.uniprot.org/uniprot/P29417 P29417] | ||
+ | ** [http://www.uniprot.org/uniprot/P26514 P26514] | ||
+ | ** [http://www.uniprot.org/uniprot/P26220 P26220] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R5P8 Q9R5P8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R5P9 Q9R5P9] | ||
+ | ** [http://www.uniprot.org/uniprot/P09850 P09850] | ||
+ | ** [http://www.uniprot.org/uniprot/P14768 P14768] | ||
+ | ** [http://www.uniprot.org/uniprot/P45796 P45796] | ||
+ | ** [http://www.uniprot.org/uniprot/P29126 P29126] | ||
+ | ** [http://www.uniprot.org/uniprot/P29127 P29127] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02244 Q02244] | ||
+ | ** [http://www.uniprot.org/uniprot/P40944 P40944] | ||
+ | ** [http://www.uniprot.org/uniprot/P55334 P55334] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56013 Q56013] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59256 Q59256] | ||
+ | ** [http://www.uniprot.org/uniprot/P55328 P55328] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01426 Q01426] | ||
+ | ** [http://www.uniprot.org/uniprot/P55331 P55331] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59257 Q59257] | ||
+ | ** [http://www.uniprot.org/uniprot/P51584 P51584] | ||
+ | ** [http://www.uniprot.org/uniprot/P49942 P49942] | ||
+ | ** [http://www.uniprot.org/uniprot/P55333 P55333] | ||
+ | ** [http://www.uniprot.org/uniprot/P55332 P55332] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59790 Q59790] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59300 Q59300] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59301 Q59301] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59674 Q59674] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59675 Q59675] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60037 Q60037] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12579 Q12579] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12580 Q12580] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60046 Q60046] | ||
+ | ** [http://www.uniprot.org/uniprot/P93185 P93185] | ||
+ | ** [http://www.uniprot.org/uniprot/P93186 P93186] | ||
+ | ** [http://www.uniprot.org/uniprot/P93187 P93187] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12603 Q12603] | ||
+ | ** [http://www.uniprot.org/uniprot/O69230 O69230] | ||
+ | ** [http://www.uniprot.org/uniprot/O30426 O30426] | ||
+ | ** [http://www.uniprot.org/uniprot/O52373 O52373] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59278 Q59278] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RKN6 Q9RKN6] | ||
+ | ** [http://www.uniprot.org/uniprot/P00694 P00694] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec-2 | + | {{#set: common-name=endo-1,4-β-xylanase|endo-1,4-beta-xylanase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-3.2.1.8}} |
+ | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:26, 15 January 2021
Contents
Reaction 3.2.1.8-RXN
- direction:
- left-to-right
- common-name:
- endo-1,4-beta-xylanase
- endo-1,4-β-xylanase
- ec-number:
Reaction formula
- 1 1-4-beta-Xylan[c] + n WATER[c] => n 1-4-D-xylooligosaccharides[c]
Gene(s) associated with this reaction
- Gene: SJ06513
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ10590
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6784, cellulose and hemicellulose degradation (cellulolosome):
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- UNIPROT:
- P10478
- Q9R5M7
- Q7M519
- Q7M520
- P35809
- Q7M513
- Q7M0W8
- P23556
- Q7M4V8
- Q9R5M6
- Q7M0X0
- Q7M0W9
- P45703
- P18429
- P40943
- P54865
- Q00177
- P79046
- O83007
- Q9UUQ2
- Q9HFA4
- Q9F1V3
- Q9AJR9
- P29417
- P26514
- P26220
- Q9R5P8
- Q9R5P9
- P09850
- P14768
- P45796
- P29126
- P29127
- Q02244
- P40944
- P55334
- Q56013
- Q59256
- P55328
- Q01426
- P55331
- Q59257
- P51584
- P49942
- P55333
- P55332
- Q59790
- Q59300
- Q59301
- Q59674
- Q59675
- Q60037
- Q12579
- Q12580
- Q60046
- P93185
- P93186
- P93187
- Q12603
- O69230
- O30426
- O52373
- Q59278
- Q9RKN6
- P00694